miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54496_sbi-miR399h:pmrd
Length = 132
Score = 262 bits (132), Expect = 6e-71
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 agtgttcagggtaagaatcacagtgcggttctcctctggcatggaggccaacatagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgttcagggtaagaatcacagtgcggttctcctctggcatggaggccaacatagcagg 60
Query: 61 cattggagaatgcacagcgctatcgccatccctgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattggagaatgcacagcgctatcgccatccctgccaaaggagaattgccctgccattcg 120
Query: 121 gtataaccctgg 132
||||||||||||
Sbjct: 121 gtataaccctgg 132
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 105 bits (53), Expect = 8e-24
Identities = 92/105 (87%)
Strand = Plus / Plus
Query: 15 gaatcacagtgcggttctcctctggcatggaggccaacatagcaggcattggagaatgca 74
|||||||||||| |||||||||||||||||| |||||| |||||||| || || | | |
Sbjct: 1 gaatcacagtgcagttctcctctggcatggatgccaacgtagcaggcgttagactacgta 60
Query: 75 cagcgctatcgccatccctgccaaaggagaattgccctgccattc 119
|| ||||| | |||||||||||||||||||||||||||||||||
Sbjct: 61 cattgctattgtcatccctgccaaaggagaattgccctgccattc 105
>55091_zma-miR399a:pmrd
Length = 123
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 agggtaagaatcacagtgcggttctcctctggca 41
||||| ||||||||||||||||||||||||||||
Sbjct: 8 agggtgagaatcacagtgcggttctcctctggca 41
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 84 tgccaaaggagaattgccctgccattc 110
>48972_osa-miR399i:pmrd
Length = 116
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggagg 47
||||||||||||| ||||||||||||||||||||
Sbjct: 4 agaatcacagtgcagttctcctctggcatggagg 37
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 tccctgccaaaggagaattgccctgccattc 119
|||||||||||||||| |||||||||||||
Sbjct: 82 tccctgccaaaggagagctgccctgccattc 112
>54884_vvi-miR399h:pmrd
Length = 90
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||
Sbjct: 60 tgccaaaggagaattgccctgccattcg 87
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 92 ctgccaaaggagaattgccctgccattc 119
||||||||||||||||||||||||||||
Sbjct: 29 ctgccaaaggagaattgccctgccattc 2
>51753_ptc-miR399g:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagaattgccctgccattc 119
||||||||||||||||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctgccattc 91
>51752_ptc-miR399f:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||
Sbjct: 72 tgccaaaggagaattgccctgccattcg 99
>48316_bdi-miR399:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 7e-09
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 21 cagtgcggttctcctctggcatggaggccaacatagcaggcattggagaatgcacagcgc 80
|||||| |||||||||||||||||| || || |||||||| || | |||| || ||
Sbjct: 1 cagtgcagttctcctctggcatggatgctaatgtagcaggccctgcacaatggactatgc 60
Query: 81 tatcgccatccctgccaaaggagaattgccctgcca 116
|||| | ||||||||||||||||||| ||||||||
Sbjct: 61 tatcactgtccctgccaaaggagaattaccctgcca 96
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 27 tgccaaaggagaattgccctgccattc 1
>48965_osa-miR399b:pmrd
Length = 97
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatgg 44
|||||||||||||| ||||||||||||||||
Sbjct: 4 agaatcacagtgcgattctcctctggcatgg 34
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattc 93
>54489_sbi-miR399a:pmrd
Length = 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
|||||||||||||||||||||| |||||
Sbjct: 98 tgccaaaggagaattgccctgcgattcg 125
>55094_zma-miR399d:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggaggc 48
|||||||||||| || |||||||||||||| ||||
Sbjct: 9 agaatcacagtgtggctctcctctggcatgaaggc 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
|||||||||||| ||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgccattcg 113
>55093_zma-miR399c:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194
>55092_zma-miR399b:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 6e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 6 tcagggtaagaatcacagtgcggttctcctctggcatggaggc 48
||||||| |||||||||||| | |||||||||||||| ||||
Sbjct: 6 tcagggtgcgaatcacagtgcagctctcctctggcatgaaggc 48
>54498_sbi-miR399j:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgcc 115
|||||||||||||||||||||||
Sbjct: 71 tgccaaaggagaattgccctgcc 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 agtgcggttctcctctggcatg 43
||||||||||||||||||||||
Sbjct: 1 agtgcggttctcctctggcatg 22
>54491_sbi-miR399c:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 91 tgccaaaggagaattgccctgcgattc 117
>54490_sbi-miR399b:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 tccctgccaaaggagaattgccctgccattc 119
|||||||||||||||| |||||||||||||
Sbjct: 80 tccctgccaaaggagagctgccctgccattc 110
>48966_osa-miR399c:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 80 tgccaaaggagaattgccctgcgattc 106
>55102_zma-miR399l:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 acagtgcggttctcctctggca 41
||||||||||||||||||||||
Sbjct: 1 acagtgcggttctcctctggca 22
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctg 113
|||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctg 85
>54877_vvi-miR399a:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagaattgccctg 113
||||||||||||||||||||||
Sbjct: 66 ctgccaaaggagaattgccctg 87
>48964_osa-miR399a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgc 114
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>48752_mtr-miR399c:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccatt 118
|||||||||||| |||||||||||||
Sbjct: 80 tgccaaaggagatttgccctgccatt 105
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctg 113
|||||||||||||||||||||
Sbjct: 148 tgccaaaggagaattgccctg 168
>54492_sbi-miR399d:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 cctgccaaaggagaattgccctgc 114
|||||||||||||| |||||||||
Sbjct: 164 cctgccaaaggagagttgccctgc 187
>48967_osa-miR399d:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 cctgccaaaggagaattgccctgc 114
|||||||||||||| |||||||||
Sbjct: 254 cctgccaaaggagagttgccctgc 277
