miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 224 bits (113), Expect = 2e-58
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 11 gtaagaatcacagtgcggttctcctctggcatggaggccaacatagcaggcattggagaa 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaagaatcacagtgcggttctcctctggcatggaggccaacatagcaggcattggagaa 60
Query: 71 tgcacagcgctatcgccatccctgccaaaggagaattgccctgccattcggta 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcacagcgctatcgccatccctgccaaaggagaattgccctgccattcggta 113
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 107 bits (54), Expect = 4e-23
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggaggccaacatagcaggcattggagaatgc 73
||||||||||||| |||||||||||||||||| |||||| |||||||| || || | |
Sbjct: 4 agaatcacagtgcagttctcctctggcatggatgccaacgtagcaggcgttagactacgt 63
Query: 74 acagcgctatcgccatccctgccaaaggagaattgccctgccattc 119
||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct: 64 acattgctattgtcatccctgccaaaggagaattgccctgccattc 109
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatg 43
||||||||||||||||||||||||||||||
Sbjct: 4 agaatcacagtgcggttctcctctggcatg 33
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcgg 121
|||||||||||||||||||||||||||||
Sbjct: 82 tgccaaaggagaattgccctgccattcgg 110
>RF00445;mir-399;AP008208.1/7649784-7649899 39947:Oryza sativa
Japonica Group
Length = 116
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggagg 47
||||||||||||| ||||||||||||||||||||
Sbjct: 4 agaatcacagtgcagttctcctctggcatggagg 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 tccctgccaaaggagaattgccctgccattc 119
|||||||||||||||| |||||||||||||
Sbjct: 82 tccctgccaaaggagagctgccctgccattc 112
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||
Sbjct: 72 tgccaaaggagaattgccctgccattcg 99
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
Length = 95
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagaattgccctgccattc 119
||||||||||||||||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctgccattc 91
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
||||||||||||||||||||||||||||
Sbjct: 62 tgccaaaggagaattgccctgccattcg 89
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagaattgccctgccattc 123
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatgg 44
|||||||||||||| ||||||||||||||||
Sbjct: 4 agaatcacagtgcgattctcctctggcatgg 34
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattc 93
>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattcg 120
|||||||||||||||||||||| |||||
Sbjct: 88 tgccaaaggagaattgccctgcgattcg 115
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||| ||||||||||||||
Sbjct: 66 tgccaaaggagatttgccctgccattc 92
>RF00445;mir-399;EU949059.1/171-61 4577:Zea mays
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggaggc 48
|||||||||||| || |||||||||||||| ||||
Sbjct: 4 agaatcacagtgtggctctcctctggcatgaaggc 38
>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 81 tgccaaaggagaattgccctgcgattc 107
>RF00445;mir-399;ABXC01002521.1/23780-23678 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 agaatcacagtgcggttctcctctggcatggaggc 48
||||||||||||| | |||||||||||||| ||||
Sbjct: 4 agaatcacagtgcagctctcctctggcatgaaggc 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 89 tccctgccaaaggagaattgccctgccattc 119
|||||||||||||||| |||||||||||||
Sbjct: 69 tccctgccaaaggagagctgccctgccattc 99
>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
Indica Group
Length = 110
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccattc 119
|||||||||||||||||||||| ||||
Sbjct: 80 tgccaaaggagaattgccctgcgattc 106
>RF00445;mir-399;AASG02001979.1/21180-21275 3988:Ricinus communis
(castor bean)
Length = 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagaattgccctg 113
||||||||||||||||||||||
Sbjct: 65 ctgccaaaggagaattgccctg 86
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccatt 118
|||||||||||| |||||||||||||
Sbjct: 70 tgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgccatt 118
|||||||||||| |||||||||||||
Sbjct: 70 tgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AM467681.2/12374-12276 29760:Vitis vinifera
Length = 99
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagaattgccctg 113
||||||||||||||||||||||
Sbjct: 68 ctgccaaaggagaattgccctg 89
>RF00445;mir-399;EU949135.1/83-185 4577:Zea mays
Length = 103
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 15 gaatcacagtgcggttctcctctggcatggaggc 48
|||||||||||| | |||||||||||||| ||||
Sbjct: 5 gaatcacagtgcagctctcctctggcatgaaggc 38
>RF00445;mir-399;AACV01002284.1/925-1073 39947:Oryza sativa Japonica
Group
Length = 149
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagaattgccctgc 114
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
