miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54497_sbi-miR399i:pmrd
Length = 121
Score = 240 bits (121), Expect = 2e-64
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 atgcctaagctgtccagtttcagggcttctctttcttggcagggagcatgagaagccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcctaagctgtccagtttcagggcttctctttcttggcagggagcatgagaagccata 60
Query: 61 gctctgctctgttctgccctctgccaaaggagagttgccctgtaacaggactcagcttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctctgctctgttctgccctctgccaaaggagagttgccctgtaacaggactcagcttat 120
Query: 121 g 121
|
Sbjct: 121 g 121
>55095_zma-miR399e:pmrd
Length = 124
Score = 176 bits (89), Expect = 2e-45
Identities = 117/124 (94%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 1 atgcctaagctgtccagtttcagggcttctctttcttggcaggga-gcatgagaagccat 59
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1 atgcctaagctgtccagtttcagggcttctctttcttggcagggaagcatgagatgccat 60
Query: 60 agctct--gctctgttctgccctctgccaaaggagagttgccctgtaacaggactcagct 117
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agctctctgctctcttcaaccctctgccaaaggagagttgccctgtaacaggactcagct 120
Query: 118 tatg 121
||||
Sbjct: 121 tatg 124
>55098_zma-miR399h:pmrd
Length = 85
Score = 99.6 bits (50), Expect = 5e-22
Identities = 78/85 (91%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 21 cagggcttctctttcttggcaggga-gcatgagaagccatagctct--gctctgttctgc 77
||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||| |
Sbjct: 1 cagggcttctctttcttggcagggaagcatgagatgccatagctctctgctctcttcaac 60
Query: 78 cctctgccaaaggagagttgccctg 102
|||||||||||||||||||||||||
Sbjct: 61 cctctgccaaaggagagttgccctg 85
>48973_osa-miR399j:pmrd
Length = 106
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 12 gtccagtttcagggcttctctttcttggcagggagcatgagaag 55
|||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct: 2 gtccagtttcagggctcctctctcttggcagggagcatgtgaag 45
>54879_vvi-miR399c:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagagttgccctgt 103
||||||||||||||||||||||||
Sbjct: 50 tctgccaaaggagagttgccctgt 73
>54881_vvi-miR399e:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 tgccctctgccaaaggagagttgccc 100
||||||||||||||||||| ||||||
Sbjct: 75 tgccctctgccaaaggagatttgccc 100
>54878_vvi-miR399b:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 87 tgccaaaggagagttgccctgt 108
>54492_sbi-miR399d:pmrd
Length = 205
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 165 ctgccaaaggagagttgccctg 186
>54381_pvu-miR399a:pmrd
Length = 223
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 89 tgccaaaggagagttgccctgt 110
>48967_osa-miR399d:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 255 ctgccaaaggagagttgccctg 276
>48756_mtr-miR399g:pmrd
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 agggcttctctttcttggcagg 43
||||||||||||||||||||||
Sbjct: 2 agggcttctctttcttggcagg 23
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctg 102
|||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccctg 74
>48088_ath-miRf10988-akr:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 101 ctgccaaaggagagttgccctg 122
>47473_ath-miRf10373-akr:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 99 ctgccaaaggagagttgccctg 120
>47472_ath-miRf10372-akr:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 102 ctgccaaaggagagttgccctg 123
>47017_ath-miR399c:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 84 tgccaaaggagagttgccctgt 105
>47016_ath-miR399b:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagttgccctg 102
||||||||||||||||||||||
Sbjct: 104 ctgccaaaggagagttgccctg 125
>47015_ath-miR399a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagagttgccctgtaa 105
|||||||||||||| |||||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaa 116
>46891_aqc-miR399:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagagttgccct 101
||||||||||||||||||||||
Sbjct: 70 tctgccaaaggagagttgccct 91
>54885_vvi-miR399i:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 gccaaaggagagttgccctgt 103
|||||||||||||||||||||
Sbjct: 93 gccaaaggagagttgccctgt 113
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 ctctgccaaaggagagttgccctgt 103
||||||||||||||| |||||||||
Sbjct: 64 ctctgccaaaggagaattgccctgt 88
>54561_sly-miR399:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccct 101
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>53699_ptc-miRf11877-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 gccaaaggagagttgccctgtaac 106
||||||||||||||||||| ||||
Sbjct: 78 gccaaaggagagttgccctctaac 101
>51758_ptc-miR399l:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 gccaaaggagagttgccctgtaac 106
||||||||||||||||||| ||||
Sbjct: 82 gccaaaggagagttgccctctaac 105
>51755_ptc-miR399i:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccct 101
||||||||||||||||||||
Sbjct: 79 tgccaaaggagagttgccct 98
