miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 202 bits (102), Expect = 8e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 11 tgtccagtttcagggcttctctttcttggcagggagcatgagaagccatagctctgctct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtccagtttcagggcttctctttcttggcagggagcatgagaagccatagctctgctct 60
Query: 71 gttctgccctctgccaaaggagagttgccctgtaacaggact 112
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttctgccctctgccaaaggagagttgccctgtaacaggact 102
>RF00445;mir-399;AC021043.4/36317-36195 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tctgccaaaggagagttgccctgtaa 105
|||||||||||||| |||||||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaa 116
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 85 tgccaaaggagagttgccctgt 106
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 agggcttctctttcttggcagg 43
||||||||||||||||||||||
Sbjct: 12 agggcttctctttcttggcagg 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 64 tgccaaaggagagttgccctgt 85
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 73 tgccaaaggagagttgccctgt 94
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagttgccctgt 103
||||||||||||||||||||||
Sbjct: 63 tgccaaaggagagttgccctgt 84
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 tgccctctgccaaaggagagttgccc 100
||||||||||||||||||| ||||||
Sbjct: 79 tgccctctgccaaaggagatttgccc 104
