miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54498_sbi-miR399j:pmrd
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 60
Query: 61 ggcccttgcttgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 ggcccttgcttgccaaaggagaattgccctgcc 93
>55091_zma-miR399a:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 63 cccttgcttgccaaaggagaattgccctgcc 93
||||| |||||||||||||||||||||||||
Sbjct: 76 cccttccttgccaaaggagaattgccctgcc 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggca 20
||||||||||||||||||||
Sbjct: 22 agtgcggttctcctctggca 41
>55102_zma-miR399l:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 cccttgcttgccaaaggagaattgccctg 91
||||| |||||||||||||||||||||||
Sbjct: 57 cccttccttgccaaaggagaattgccctg 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggca 20
||||||||||||||||||||
Sbjct: 3 agtgcggttctcctctggca 22
>54884_vvi-miR399h:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 59 ttgccaaaggagaattgccctgcc 82
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 28 ttgccaaaggagaattgccctgcc 5
>51752_ptc-miR399f:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgcc 94
>54496_sbi-miR399h:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgcc 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggcatg 22
||||||||||||||||||||||
Sbjct: 22 agtgcggttctcctctggcatg 43
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 28 tgccaaaggagaattgccctgcc 6
>51753_ptc-miR399g:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgcc 87
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 79 tgccaaaggagaattgccctgcc 101
>48965_osa-miR399b:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgcc 89
>55093_zma-miR399c:pmrd
Length = 207
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 168 tgccaaaggagaattgccctgc 189
>54491_sbi-miR399c:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 91 tgccaaaggagaattgccctgc 112
>54489_sbi-miR399a:pmrd
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 98 tgccaaaggagaattgccctgc 119
>48966_osa-miR399c:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 80 tgccaaaggagaattgccctgc 101
>48964_osa-miR399a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctg 91
|||||||||||||||||||||
Sbjct: 148 tgccaaaggagaattgccctg 168
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctg 91
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>48752_mtr-miR399c:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||| ||||||||||
Sbjct: 79 ttgccaaaggagatttgccctgcc 102
