miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 agtgcggttctcctctggcatgaacgacggctggagcagcttgccacatggctcggccac 71
Query: 61 ggcccttgcttgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||||||||||||
Sbjct: 72 ggcccttgcttgccaaaggagaattgccctgcc 104
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 96 ttgccaaaggagaattgccctgcc 119
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus
trichocarpa
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 71 ttgccaaaggagaattgccctgcc 94
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 70 ttgccaaaggagaattgccctgcc 93
||||||||||||||||||||||||
Sbjct: 61 ttgccaaaggagaattgccctgcc 84
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus
trichocarpa
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgcc 87
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgcc 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 agtgcggttctcctctggcatg 22
||||||||||||||||||||||
Sbjct: 12 agtgcggttctcctctggcatg 33
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgcc 105
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgcc 93
|||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgcc 89
>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 88 tgccaaaggagaattgccctgc 109
>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 81 tgccaaaggagaattgccctgc 102
>RF00445;mir-399;AACV01002284.1/925-1073 39947:Oryza sativa Japonica
Group
Length = 149
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
Indica Group
Length = 110
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgccaaaggagaattgccctgc 92
||||||||||||||||||||||
Sbjct: 80 tgccaaaggagaattgccctgc 101
