miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54499_sbi-miR408:pmrd
Length = 205
Score = 406 bits (205), Expect = e-114
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
Query: 61 gcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagagaaggtgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagagaaggtgcctc 120
Query: 121 cctggtgaaatggtgatggcctgagagagctcagctggtgtcctggtgttgttgcttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctggtgaaatggtgatggcctgagagagctcagctggtgtcctggtgttgttgcttcct 180
Query: 181 cccctgcactgcctcttccctggct 205
|||||||||||||||||||||||||
Sbjct: 181 cccctgcactgcctcttccctggct 205
>54648_sof-miR408c:pmrd
Length = 286
Score = 129 bits (65), Expect = 9e-31
Identities = 145/174 (83%), Gaps = 22/174 (12%)
Strand = Plus / Plus
Query: 51 atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110
||||| |||||||||| ||||||| ||||||| |||| ||||| ||||||||||| ||
Sbjct: 98 atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 154
Query: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151
|| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 155 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagct 214
Query: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 268
Score = 73.8 bits (37), Expect = 5e-14
Identities = 51/55 (92%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatggggccat---caacaaaatttccaatttc 73
>54647_sof-miR408b:pmrd
Length = 286
Score = 127 bits (64), Expect = 4e-30
Identities = 96/109 (88%), Gaps = 12/109 (11%)
Strand = Plus / Plus
Query: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 219
Query: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 268
Score = 73.8 bits (37), Expect = 5e-14
Identities = 51/55 (92%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatggggccat---caacaaaatttccaatttc 73
>54649_sof-miR408d:pmrd
Length = 215
Score = 113 bits (57), Expect = 5e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 145 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 204
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 196
Query: 205 t 205
|
Sbjct: 197 t 197
Score = 111 bits (56), Expect = 2e-25
Identities = 70/74 (94%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 22 acagggacgaggcagagcatgggatggggccat---caacaaaatttccaatttccgttt 78
Query: 61 gcttgcccacaaaa 74
|||||| |||||||
Sbjct: 79 gcttgctcacaaaa 92
>54646_sof-miR408a:pmrd
Length = 283
Score = 101 bits (51), Expect = 2e-22
Identities = 142/174 (81%), Gaps = 25/174 (14%)
Strand = Plus / Plus
Query: 51 atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110
||||| |||||||||| ||||||| ||||||| |||| ||||| ||||||||||| ||
Sbjct: 98 atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 154
Query: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151
|| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 155 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagct 214
Query: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 215 cagctggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggct 265
Score = 65.9 bits (33), Expect = 1e-11
Identities = 50/55 (90%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 73
>54650_sof-miR408e:pmrd
Length = 283
Score = 75.8 bits (38), Expect = 1e-14
Identities = 90/109 (82%), Gaps = 15/109 (13%)
Strand = Plus / Plus
Query: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggatgagagctcagct 219
Query: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
||||||||| ||||||||| || |||||||||| |||||||||||||
Sbjct: 220 ggtgtcctg---ttgttgcttacttccctgcactgactcttccctggct 265
Score = 65.9 bits (33), Expect = 1e-11
Identities = 50/55 (90%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 22 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 73
>55104_zma-miR408:pmrd
Length = 191
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 166 gtgttgttgcttcctcccctgcactgcctcttccctggct 205
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggct 173
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaa 39
||||||| ||| |||||||||||||||||||||||||||
Sbjct: 22 acagggatgagacagagcatgggatggggccatcaacaa 60
>48975_osa-miR408:pmrd
Length = 213
Score = 69.9 bits (35), Expect = 7e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 167 tgttgttgcttcctcccctgcactgcctcttccctggct 205
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggct 174
Score = 60.0 bits (30), Expect = 7e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaaca 38
||||||| |||||||||||||||||||||| |||||||
Sbjct: 30 acagggatgaggcagagcatgggatggggctatcaaca 67
>54690_tae-miR408:pmrd
Length = 187
Score = 54.0 bits (27), Expect = 4e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 167 tgttgttgcttcctcccctgcactgcctcttccctggct 205
|||||||||| |||||| |||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggct 157
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 181 cccctgcactgcctcttccctggct 205
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 7e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 177 tcctcccctgcactgcctcttccctggct 205
||||||| |||||||||||||||||||||
Sbjct: 63 tcctcccatgcactgcctcttccctggct 91
>54892_vvi-miR408:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggct 98
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggct 85
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggct 5
>47031_ath-miR408:pmrd
Length = 218
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggct 141
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 185 tgcactgcctcttccctggct 205
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
