miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 166 gtgttgttgcttcctcccctgcactgcctcttccctggct 205
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 135 gtgttgttgctccctcccctgcactgcctcttccctggct 174
Score = 54.0 bits (27), Expect = 8e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaa 39
||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 20 acagggatgagacagagaatgggatggggccatcaacaa 58
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 71.9 bits (36), Expect = 3e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 166 gtgttgttgcttcctcccctgcactgcctcttccctggct 205
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 126 gtgttgttgctccctcccctgcactgcctcttccctggct 165
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaacaa 39
||||||| |||||||||||||||||||||| ||||||||
Sbjct: 20 acagggatgaggcagagcatgggatggggctatcaacaa 58
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 167 tgttgttgcttcctcccctgcactgcctcttccctggct 205
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggct 163
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatgggatggggccatcaaca 38
||||||| |||||||||||||||||||||| |||||||
Sbjct: 19 acagggatgaggcagagcatgggatggggctatcaaca 56
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 168 gttgttgcttcctcccctgcactgcctcttccctggct 205
||||||||| ||||||||||||||||||||||||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggct 163
Score = 54.0 bits (27), Expect = 8e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 1 acagggacgaggcagagcatggg-atggggccatcaaca 38
||||||||||||||||||||||| | |||||||||||||
Sbjct: 19 acagggacgaggcagagcatgggtagggggccatcaaca 57
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 181 cccctgcactgcctcttccctggct 205
|||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggct 106
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 181 cccctgcactgcctcttccctggct 205
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
