miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54511_sbi-miR437o:pmrd
Length = 175
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 162 ttagtcaaagttagagaagtttgacttag 190
|||||||||||||||||||||||||||||
Sbjct: 147 ttagtcaaagttagagaagtttgacttag 175
>54515_sbi-miR437s:pmrd
Length = 176
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 151 gtcaaagttagagaagtttgacttag 176
>54512_sbi-miR437p:pmrd
Length = 188
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 163 gtcaaagttagagaagtttgacttag 188
>54507_sbi-miR437k:pmrd
Length = 172
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 147 gtcaaagttagagaagtttgacttag 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 165 gtcaaagttagagaagtttgac 186
||||||||||||||||||||||
Sbjct: 24 gtcaaagttagagaagtttgac 3
>54504_sbi-miR437g:pmrd
Length = 176
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 151 gtcaaagttagagaagtttgacttag 176
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 162 ttagtcaaagttagagaagtttgact 187
||||||||||||||| ||||||||||
Sbjct: 27 ttagtcaaagttagaaaagtttgact 2
>54503_sbi-miR437f:pmrd
Length = 174
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 149 gtcaaagttagagaagtttgacttag 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 166 tcaaagttagagaagtttgact 187
||||||||||||||||||||||
Sbjct: 22 tcaaagttagagaagtttgact 1
>48988_osa-miR437:pmrd
Length = 213
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 152 gtcaaagttagagaagtttgacttag 177
>48987_osa-miR437:pmrd
Length = 213
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 152 gtcaaagttagagaagtttgacttag 177
>48986_osa-miR437:pmrd
Length = 213
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgacttag 190
||||||||||||||||||||||||||
Sbjct: 152 gtcaaagttagagaagtttgacttag 177
>55112_zma-miR437f:pmrd
Length = 342
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 165 gtcaaagttagagaagtttgactta 189
|||||||||||||||||||||||||
Sbjct: 25 gtcaaagttagagaagtttgactta 1
>55107_zma-miR437a:pmrd
Length = 342
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgactta 189
|||||||||||||||||||||||||
Sbjct: 318 gtcaaagttagagaagtttgactta 342
>54513_sbi-miR437q:pmrd
Length = 160
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 150 ctttttatagatttagtcaaagttagagaagtttgacttag 190
|||| |||||| || || |||||||||||||||||||||||
Sbjct: 120 ctttctatagagttggtaaaagttagagaagtttgacttag 160
>55108_zma-miR437b:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 166 tcaaagttagagaagtttgactta 189
||||||||||||||||||||||||
Sbjct: 145 tcaaagttagagaagtttgactta 168
>54651_sof-miR437:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 166 tcaaagttagagaagtttgactta 189
||||||||||||||||||||||||
Sbjct: 126 tcaaagttagagaagtttgactta 149
>54516_sbi-miR437t:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgactt 188
||||||||||||||||||||||||
Sbjct: 147 gtcaaagttagagaagtttgactt 170
>54514_sbi-miR437r:pmrd
Length = 180
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 167 caaagttagagaagtttgacttag 190
||||||||||||||||||||||||
Sbjct: 157 caaagttagagaagtttgacttag 180
>54506_sbi-miR437j:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgactt 188
||||||||||||||||||||||||
Sbjct: 149 gtcaaagttagagaagtttgactt 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 165 gtcaaagttagagaagtttgac 186
||||||||||||||||||||||
Sbjct: 22 gtcaaagttagagaagtttgac 1
>54505_sbi-miR437i:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgactt 188
||||||||||||||||||||||||
Sbjct: 147 gtcaaagttagagaagtttgactt 170
>54502_sbi-miR437e:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgactt 188
||||||||||||||||||||||||
Sbjct: 78 gtcaaagttagagaagtttgactt 101
>54500_sbi-miR437b:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgactt 188
||||||||||||||||||||||||
Sbjct: 148 gtcaaagttagagaagtttgactt 171
>54509_sbi-miR437m:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 168 aaagttagagaagtttgacttag 190
|||||||||||||||||||||||
Sbjct: 152 aaagttagagaagtttgacttag 174
>55110_zma-miR437d:pmrd
Length = 179
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 169 aagttagagaagtttgacttag 190
||||||||||||||||||||||
Sbjct: 156 aagttagagaagtttgacttag 177
>55109_zma-miR437c:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 gtcaaagttagagaagtttgac 186
||||||||||||||||||||||
Sbjct: 156 gtcaaagttagagaagtttgac 177
>54518_sbi-miR437v:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 167 caaagttagagaagtttgactt 188
||||||||||||||||||||||
Sbjct: 93 caaagttagagaagtttgactt 114
>54510_sbi-miR437n:pmrd
Length = 182
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 168 aaagttagagaagtttgactta 189
||||||||||||||||||||||
Sbjct: 160 aaagttagagaagtttgactta 181
>54508_sbi-miR437l:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 167 caaagttagagaagtttgactt 188
||||||||||||||||||||||
Sbjct: 149 caaagttagagaagtttgactt 170
>54519_sbi-miR437w:pmrd
Length = 173
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 aaagttagagaagtttgactt 188
|||||||||||||||||||||
Sbjct: 153 aaagttagagaagtttgactt 173
>54517_sbi-miR437u:pmrd
Length = 164
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 aaagttagagaagtttgactt 188
|||||||||||||||||||||
Sbjct: 144 aaagttagagaagtttgactt 164
>54501_sbi-miR437d:pmrd
Length = 136
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 aaagttagagaagtttgactt 188
|||||||||||||||||||||
Sbjct: 114 aaagttagagaagtttgactt 134
>51322_pci-miR437:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 165 gtcaaagttagagaagtttgactta 189
||||||| |||||||||||||||||
Sbjct: 64 gtcaaagctagagaagtttgactta 40
>55113_zma-miR437g:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 aaagttagagaagtttgact 187
||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgact 173
