miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54501_sbi-miR437d:pmrd
Length = 136
Score = 270 bits (136), Expect = 2e-73
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 aagtcaatcttctctaactcgaagagtttatatattaacatctatatctatacaagataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtcaatcttctctaactcgaagagtttatatattaacatctatatctatacaagataa 60
Query: 61 atgaacctaatgtgatgttgtaaatattggtgcattttcctataaacttggttaaagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgaacctaatgtgatgttgtaaatattggtgcattttcctataaacttggttaaagtta 120
Query: 121 gagaagtttgacttgg 136
||||||||||||||||
Sbjct: 121 gagaagtttgacttgg 136
>54500_sbi-miR437b:pmrd
Length = 171
Score = 79.8 bits (40), Expect = 5e-16
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 87 ttggtgcattttcctataaacttggttaaagttagagaagtttgactt 134
|||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 124 ttggtgcatttttctataaacttggtcaaagttagagaagtttgactt 171
>55112_zma-miR437f:pmrd
Length = 342
Score = 77.8 bits (39), Expect = 2e-15
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 73 tgatgttgtaaatattggtgcattttc-ctataaacttggttaaagttagagaagtttga 131
|||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 64 tgatgttgtatatatttgtgcattttttctataaacttggtcaaagttagagaagtttga 5
Query: 132 ctt 134
|||
Sbjct: 4 ctt 2
>55107_zma-miR437a:pmrd
Length = 342
Score = 77.8 bits (39), Expect = 2e-15
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 73 tgatgttgtaaatattggtgcattttc-ctataaacttggttaaagttagagaagtttga 131
|||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 279 tgatgttgtatatatttgtgcattttttctataaacttggtcaaagttagagaagtttga 338
Query: 132 ctt 134
|||
Sbjct: 339 ctt 341
>54517_sbi-miR437u:pmrd
Length = 164
Score = 77.8 bits (39), Expect = 2e-15
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 60 aatgaacctaatgtgatgttgtaaatattggtgcattttcctataaacttggttaaagtt 119
|||||| ||||| |||||| || ||||||| | ||||| ||||||||||||| ||||||
Sbjct: 90 aatgaaactaatttgatgtcatagatattggcgtatttttctataaacttggtgaaagtt 149
Query: 120 agagaagtttgactt 134
|||||||||||||||
Sbjct: 150 agagaagtttgactt 164
>54505_sbi-miR437i:pmrd
Length = 170
Score = 75.8 bits (38), Expect = 7e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 73 tgatgttgtaaatattggtgcattttcctataaacttggttaaagttagagaagtttgac 132
||||| |||| ||| ||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 109 tgatggtgtagataatggtgcatttttctataaactttgtcaaagttagagaagtttgac 168
Query: 133 tt 134
||
Sbjct: 169 tt 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 104 aaacttggttaaagttagagaagtttgac 132
||||||||| ||||||| |||||||||||
Sbjct: 29 aaacttggtcaaagttaaagaagtttgac 1
>54504_sbi-miR437g:pmrd
Length = 176
Score = 75.8 bits (38), Expect = 7e-15
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 73 tgatgttgtaaatattggtgcattttcctataaacttggttaaagttagagaagtttgac 132
|||||||||| || ||| |||| ||| ||||||||||||| |||||||||||||||||||
Sbjct: 113 tgatgttgtagatgttgatgcaattttctataaacttggtcaaagttagagaagtttgac 172
Query: 133 tt 134
||
Sbjct: 173 tt 174
>54516_sbi-miR437t:pmrd
Length = 170
Score = 73.8 bits (37), Expect = 3e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 90 gtgcattttcctataaacttggttaaagttagagaagtttgactt 134
||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 126 gtgcatttttctataaacttggtcaaagttagagaagtttgactt 170
>54506_sbi-miR437j:pmrd
Length = 172
Score = 71.9 bits (36), Expect = 1e-13
Identities = 46/48 (95%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 85 tattggtgcattttcctataaacttggttaaagttagagaagtttgac 132
||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 47 tattggtgcattttc-tataaacttggtcaaagttagagaagtttgac 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 104 aaacttggttaaagttagagaagtttgactt 134
|||| |||| |||||||||||||||||||||
Sbjct: 142 aaacatggtcaaagttagagaagtttgactt 172
>54503_sbi-miR437f:pmrd
Length = 174
Score = 71.9 bits (36), Expect = 1e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 87 ttggtgcattttcctataaacttggttaaagttagagaagtttgactt 134
|||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 125 ttggtgcacttttctataaacttggtcaaagttagagaagtttgactt 172
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 114 aaagttagagaagtttgact 133
||||||||||||||||||||
Sbjct: 20 aaagttagagaagtttgact 1
>54518_sbi-miR437v:pmrd
Length = 114
Score = 67.9 bits (34), Expect = 2e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 73 tgatgttgtaaatattggtgcattttcctataaacttggttaaagttagagaagtttgac 132
|||| ||||| || ||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct: 53 tgatattgtagatgttgatgcatttttctataaacttggacaaagttagagaagtttgac 112
Query: 133 tt 134
||
Sbjct: 113 tt 114
>54651_sof-miR437:pmrd
Length = 149
Score = 65.9 bits (33), Expect = 7e-12
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 87 ttggtgcattttcctataaacttggttaaagttagagaagtttgacttg 135
|||||||||||| ||||||||||| | ||||||||||| ||||||||||
Sbjct: 49 ttggtgcatttttctataaacttgatcaaagttagagaggtttgacttg 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 95 ttttcctataaacttggttaaagttagagaagtttgactt 134
|||| ||| ||||||| | |||||||||||||||||||||
Sbjct: 109 tttttctaaaaacttgatcaaagttagagaagtttgactt 148
>54510_sbi-miR437n:pmrd
Length = 182
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 140 atttttctacaaacttggttaaagttagagaagtttgactt 180
>48988_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>48987_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>48986_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 7e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>54514_sbi-miR437r:pmrd
Length = 180
Score = 61.9 bits (31), Expect = 1e-10
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 67 ctaatgtgatgttgtaaatattggtgcattttcctataaacttggttaaagttagagaag 126
||||| |||||||||||||||| || |||||| ||||| ||||||| ||| | |||||||
Sbjct: 67 ctaatttgatgttgtaaatattagtacatttttctatagacttggtcaaaataagagaag 8
Query: 127 ttt 129
|||
Sbjct: 7 ttt 5
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 100 ctataaacttggttaaagttagagaagtttgactt 134
|||||||||||| |||||||||||||||||||||
Sbjct: 144 ctataaacttggccaaagttagagaagtttgactt 178
>54512_sbi-miR437p:pmrd
Length = 188
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 102 ataaacttggttaaagttagagaagtttgactt 134
||||||||||| |||||||||||||||||||||
Sbjct: 154 ataaacttggtcaaagttagagaagtttgactt 186
>54507_sbi-miR437k:pmrd
Length = 172
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
||||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 130 atttttctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 87 ttggtgcattttcctataaacttggttaaagttagagaagtttgac 132
|||||| ||||| |||||| ||||| |||||||||||||||||||
Sbjct: 48 ttggtgtatttttctataagtttggtcaaagttagagaagtttgac 3
>55108_zma-miR437b:pmrd
Length = 168
Score = 56.0 bits (28), Expect = 7e-09
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 67 ctaatgtgatgttgtaaatattggtgcattttcctataaacttggttaaagttagagaag 126
||||| |||||| |||||| ||| ||| ||||| |||||||||||| |||| || |||||
Sbjct: 68 ctaatctgatgtcgtaaatgttgatgcgttttc-tataaacttggtcaaagatacagaag 10
Query: 127 tttgactt 134
||||||||
Sbjct: 9 tttgactt 2
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 104 aaacttggttaaagttagagaagtttgactt 134
||||||| | |||||||||||||||||||||
Sbjct: 137 aaacttgttcaaagttagagaagtttgactt 167
>54519_sbi-miR437w:pmrd
Length = 173
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 95 ttttcctataaacttggttaaagttagagaagtttgactt 134
|||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 134 tttttctaaaaacttggtgaaagttagagaagtttgactt 173
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 67 ctaatgtgatgttgtaaatattggtgcattttcctataaacttggt 112
||||| |||||||| |||| ||| |||||||| |||||||||||||
Sbjct: 64 ctaatttgatgttggaaatgttgatgcatttttctataaacttggt 19
>54502_sbi-miR437e:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 104 aaacttggttaaagttagagaagtttgactt 134
||||||||| |||||||||||||||||||||
Sbjct: 71 aaacttggtcaaagttagagaagtttgactt 101
>51322_pci-miR437:pmrd
Length = 166
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 100 ctataaacttggttaaagttagagaagtttgactt 134
||||||||||||| |||| ||||||||||||||||
Sbjct: 75 ctataaacttggtcaaagctagagaagtttgactt 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 102 ataaacttggttaaagttagagaagtttgactt 134
||||||||||| ||||||| |||| ||||||||
Sbjct: 99 ataaacttggtcaaagttacagaattttgactt 131
>55111_zma-miR437e:pmrd
Length = 182
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
||||| ||||||||||||| |||||| |||||||||||||
Sbjct: 140 atttttctataaacttggtcgaagttaaagaagtttgactt 180
>54509_sbi-miR437m:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 4e-07
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 60 aatgaacctaatgtgatgttgtaaatattggtgcattttcctataaacttggttaaagtt 119
|||||| ||||| |||| || || || |||||||||||| ||| |||||| ||||||||
Sbjct: 73 aatgaagctaatttgatattctagatgttggtgcatttttctagtaacttgtttaaagtt 14
Query: 120 agagaagtttgac 132
||| ||||||||
Sbjct: 13 agatgagtttgac 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 aaagttagagaagtttgactt 134
|||||||||||||||||||||
Sbjct: 152 aaagttagagaagtttgactt 172
>54508_sbi-miR437l:pmrd
Length = 170
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
>55110_zma-miR437d:pmrd
Length = 179
Score = 46.1 bits (23), Expect = 7e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 92 gcattttcctataaacttggttaaagttagagaagtttgactt 134
||||||| ||||||| ||| | ||||||||||||||||||||
Sbjct: 133 gcatttttctataaatttgatctaagttagagaagtttgactt 175
>54513_sbi-miR437q:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 108 ttggttaaagttagagaagtttgactt 134
||||| |||||||||||||||||||||
Sbjct: 132 ttggtaaaagttagagaagtttgactt 158
>54511_sbi-miR437o:pmrd
Length = 175
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 104 aaacttggttaaagttagagaagtttgactt 134
|||||| || |||||||||||||||||||||
Sbjct: 143 aaacttagtcaaagttagagaagtttgactt 173
>55109_zma-miR437c:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 107 cttggttaaagttagagaagtttgac 132
|||||| |||||||||||||||||||
Sbjct: 152 cttggtcaaagttagagaagtttgac 177
>55113_zma-miR437g:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 tggttaaagttagagaagtttgact 133
|||| ||||||||||||||||||||
Sbjct: 149 tggtaaaagttagagaagtttgact 173
>54515_sbi-miR437s:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 aaagttagagaagtttgactt 134
|||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgactt 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 95 ttttcctataaacttggttaaagttagagaagtttgactt 134
|||| |||||||| ||| ||||||| |||||||||||||
Sbjct: 40 tttttctataaacctggacaaagttaaagaagtttgactt 1
