miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54502_sbi-miR437e:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 cagattactgattttgatcaacattgtctgaaatactaaatcaattagatgttaatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagattactgattttgatcaacattgtctgaaatactaaatcaattagatgttaatatat 60
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
>54507_sbi-miR437k:pmrd
Length = 172
Score = 77.8 bits (39), Expect = 1e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 59 atatttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 128 atatttttctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 75 ttggtcaaagttagagaagtttgac 99
|||||||||||||||||||||||||
Sbjct: 27 ttggtcaaagttagagaagtttgac 3
>54508_sbi-miR437l:pmrd
Length = 170
Score = 73.8 bits (37), Expect = 2e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 57 atatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 126 atatatttttctaaaaacttggccaaagttagagaagtttgactt 170
>54651_sof-miR437:pmrd
Length = 149
Score = 71.9 bits (36), Expect = 8e-14
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 46 tagatgttaatatatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct: 94 tagatgataatatat-tttttctaaaaacttgatcaaagttagagaagtttgactt 148
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| ||||||| ||||||||||||| |||||||||
Sbjct: 42 atttttctataaacttgatcaaagttagagaggtttgactt 2
>54516_sbi-miR437t:pmrd
Length = 170
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 130 atttttctataaacttggtcaaagttagagaagtttgactt 170
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 72 aacttggtcaaagttagagaagtttgac 99
||||||||||||| |||| |||||||||
Sbjct: 28 aacttggtcaaagatagacaagtttgac 1
>54500_sbi-miR437b:pmrd
Length = 171
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 131 atttttctataaacttggtcaaagttagagaagtttgactt 171
>48988_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>48987_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>48986_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>55112_zma-miR437f:pmrd
Length = 342
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 62 tttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||| |||||||||||||||||||||||||||||||
Sbjct: 41 tttttctataaacttggtcaaagttagagaagtttgactt 2
>55107_zma-miR437a:pmrd
Length = 342
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 62 tttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||| |||||||||||||||||||||||||||||||
Sbjct: 302 tttttctataaacttggtcaaagttagagaagtttgactt 341
>54519_sbi-miR437w:pmrd
Length = 173
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 62 tttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||| |||||||||| |||||||||||||||||||||
Sbjct: 134 tttttctaaaaacttggtgaaagttagagaagtttgactt 173
>54511_sbi-miR437o:pmrd
Length = 175
Score = 63.9 bits (32), Expect = 2e-11
Identities = 48/52 (92%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 50 tgttaatatatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 123 tgttaatatat-tttttataaaaacttagtcaaagttagagaagtttgactt 173
>54510_sbi-miR437n:pmrd
Length = 182
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 58 tatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 137 tatatttttctacaaacttggttaaagttagagaagtttgactt 180
>55109_zma-miR437c:pmrd
Length = 177
Score = 61.9 bits (31), Expect = 8e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 57 atatatttttctgaaaacttggtcaaagttagagaagtttgac 99
||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 135 atatatttttcaaaaagcttggtcaaagttagagaagtttgac 177
>54512_sbi-miR437p:pmrd
Length = 188
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
|||||||||||||||||||||||||||||||
Sbjct: 156 aaacttggtcaaagttagagaagtttgactt 186
>54504_sbi-miR437g:pmrd
Length = 176
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
|||||||||||||||||||||||||||||||
Sbjct: 144 aaacttggtcaaagttagagaagtttgactt 174
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 70 aaaacttggtcaaagttagagaagtttgact 100
||||||| |||||||||||| ||||||||||
Sbjct: 32 aaaacttagtcaaagttagaaaagtttgact 2
>54503_sbi-miR437f:pmrd
Length = 174
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
|||||||||||||||||||||||||||||||
Sbjct: 142 aaacttggtcaaagttagagaagtttgactt 172
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 79 tcaaagttagagaagtttgact 100
||||||||||||||||||||||
Sbjct: 22 tcaaagttagagaagtttgact 1
>54517_sbi-miR437u:pmrd
Length = 164
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 60 tatttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
>54518_sbi-miR437v:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||||| ||||||||||||||||||||||
Sbjct: 74 atttttctataaacttggacaaagttagagaagtttgactt 114
>54506_sbi-miR437j:pmrd
Length = 172
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 71 aaacttggtcaaagttagagaagtttgac 99
|||||||||||||||||||||||||||||
Sbjct: 29 aaacttggtcaaagttagagaagtttgac 1
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 70 aaaacttggtcaaagttagagaagtttgactt 101
||||| ||||||||||||||||||||||||||
Sbjct: 141 aaaacatggtcaaagttagagaagtttgactt 172
>54505_sbi-miR437i:pmrd
Length = 170
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||| ||||||||||||||||||||||||
Sbjct: 130 atttttctataaactttgtcaaagttagagaagtttgactt 170
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 71 aaacttggtcaaagttagagaagtttgac 99
||||||||||||||||| |||||||||||
Sbjct: 29 aaacttggtcaaagttaaagaagtttgac 1
>54509_sbi-miR437m:pmrd
Length = 174
Score = 56.0 bits (28), Expect = 5e-09
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 57 atatatttttctgaaaacttggtcaaa--gttagagaagtttgactt 101
||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct: 126 atataattttctaaaaacttggtcaaaaagttagagaagtttgactt 172
>55111_zma-miR437e:pmrd
Length = 182
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 59 atatttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||||| |||||||||| |||||| |||||||||||||
Sbjct: 138 atatttttctataaacttggtcgaagttaaagaagtttgactt 180
>55108_zma-miR437b:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
||||||| |||||||||||||||||||||||
Sbjct: 137 aaacttgttcaaagttagagaagtttgactt 167
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
|||||||||||||| || |||||||||||||
Sbjct: 32 aaacttggtcaaagatacagaagtttgactt 2
>54514_sbi-miR437r:pmrd
Length = 180
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
|||||||| ||||||||||||||||||||||
Sbjct: 148 aaacttggccaaagttagagaagtttgactt 178
>54501_sbi-miR437d:pmrd
Length = 136
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
||||||||| |||||||||||||||||||||
Sbjct: 104 aaacttggttaaagttagagaagtttgactt 134
>51322_pci-miR437:pmrd
Length = 166
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
|||||||||||||| ||||||||||||||||
Sbjct: 71 aaacttggtcaaagctagagaagtttgactt 41
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 71 aaacttggtcaaagttagagaagtttgactt 101
||||||||||||||||| |||| ||||||||
Sbjct: 101 aaacttggtcaaagttacagaattttgactt 131
>54515_sbi-miR437s:pmrd
Length = 176
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 ggtcaaagttagagaagtttgactt 101
|||||||||||||||||||||||||
Sbjct: 150 ggtcaaagttagagaagtttgactt 174
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 62 tttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||| |||| ||| |||||||| |||||||||||||
Sbjct: 40 tttttctataaacctggacaaagttaaagaagtttgactt 1
>54513_sbi-miR437q:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 75 ttggtcaaagttagagaagtttgactt 101
||||| |||||||||||||||||||||
Sbjct: 132 ttggtaaaagttagagaagtttgactt 158
>55113_zma-miR437g:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 tggtcaaagttagagaagtttgact 100
|||| ||||||||||||||||||||
Sbjct: 149 tggtaaaagttagagaagtttgact 173
>55110_zma-miR437d:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| ||| ||| || ||||||||||||||||||||
Sbjct: 135 atttttctataaatttgatctaagttagagaagtttgactt 175
>48328_bdi-miR2504b:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 61 atttttctgaaaacttggtcaaagttagagaagtttgactt 101
|||||||| |||||||||||| | || |||||||||||||
Sbjct: 88 atttttctaaaaacttggtcagacttgaagaagtttgactt 128
>48318_bdi-miR437:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 58 tatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
||||||| ||| ||| |||||| || |||||||||||||||||
Sbjct: 70 tatatttgtctaaaagattggtcgaacttagagaagtttgactt 113
