miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54508_sbi-miR437l:pmrd
Length = 170
Score = 337 bits (170), Expect = 2e-93
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 gtcaaactttgttaacattgaccaaatttatagaaaaatgcaccaacagacaacaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaaactttgttaacattgaccaaatttatagaaaaatgcaccaacagacaacaccaaa 60
Query: 61 ttagtttaattaaattttccatacaataagctttgatagagcaattttttgagaagtaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagtttaattaaattttccatacaataagctttgatagagcaattttttgagaagtaga 120
Query: 121 tgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
>54507_sbi-miR437k:pmrd
Length = 172
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 128 atatttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 128 atatttttctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 129 tatttttctaaaaacttggccaaagttagagaagtttgac 168
|||||||||| || |||| ||||||||||||||||||||
Sbjct: 42 tatttttctataagtttggtcaaagttagagaagtttgac 3
>55109_zma-miR437c:pmrd
Length = 177
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 116 gtagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgac 168
||||||| ||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 125 gtagatgctaatatatttttcaaaaagcttggtcaaagttagagaagtttgac 177
>54502_sbi-miR437e:pmrd
Length = 101
Score = 73.8 bits (37), Expect = 4e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 126 atatatttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 57 atatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
>54651_sof-miR437:pmrd
Length = 149
Score = 71.9 bits (36), Expect = 1e-13
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 116 gtagatgttaatatatttt-tctaaaaacttggccaaagttagagaagtttgactt 170
||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 93 gtagatgataatatattttttctaaaaacttgatcaaagttagagaagtttgactt 148
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 42 atttttctataaacttgatcaaagttagagaggtttgactt 2
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 13 taacattgaccaaatttatagaaaaatgcaccaa 46
|||| |||| ||| ||||||||||||||||||||
Sbjct: 16 taactttgatcaagtttatagaaaaatgcaccaa 49
>54510_sbi-miR437n:pmrd
Length = 182
Score = 71.9 bits (36), Expect = 1e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 119 gatgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 129 gatgttagtatatttttctacaaacttggttaaagttagagaagtttgactt 180
>54518_sbi-miR437v:pmrd
Length = 114
Score = 69.9 bits (35), Expect = 6e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 116 gtagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| || ||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 60 gtagatgttgatgcatttttctataaacttggacaaagttagagaagtttgactt 114
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 13 taacattgaccaaatttatagaaaaatgcaccaaca 48
|||| ||| |||| |||||||||||||||| |||||
Sbjct: 100 taactttgtccaagtttatagaaaaatgcatcaaca 65
>54509_sbi-miR437m:pmrd
Length = 174
Score = 69.9 bits (35), Expect = 6e-13
Identities = 53/58 (91%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 115 agtagatgttaatatatttttctaaaaacttggcc--aaagttagagaagtttgactt 170
|||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct: 115 agtatatgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgactt 172
>54506_sbi-miR437j:pmrd
Length = 172
Score = 69.9 bits (35), Expect = 6e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 116 gtagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||||||| ||||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 118 gtagatgttaatgtattttttgaaaaacatggtcaaagttagagaagtttgactt 172
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 132 ttttctaaaaacttggccaaagttagagaagtttgac 168
||||||| |||||||| ||||||||||||||||||||
Sbjct: 37 ttttctataaacttggtcaaagttagagaagtttgac 1
>54514_sbi-miR437r:pmrd
Length = 180
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 133 tttctaaaaacttggccaaagttagagaagtttgactt 170
|||||| |||||||||||||||||||||||||||||||
Sbjct: 141 tttctataaacttggccaaagttagagaagtttgactt 178
>54516_sbi-miR437t:pmrd
Length = 170
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 130 atttttctataaacttggtcaaagttagagaagtttgactt 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 46/53 (86%), Gaps = 4/53 (7%)
Strand = Plus / Minus
Query: 116 gtagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgac 168
||||||||||||||||||||| ||||||| ||||| |||| |||||||||
Sbjct: 49 gtagatgttaatatatttttc----aacttggtcaaagatagacaagtttgac 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 13 taacattgaccaaatttatagaaaaatgcaccaaca 48
|||| |||||||| ||||||||||||||||| ||||
Sbjct: 156 taactttgaccaagtttatagaaaaatgcacaaaca 121
>54500_sbi-miR437b:pmrd
Length = 171
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 131 atttttctataaacttggtcaaagttagagaagtttgactt 171
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 13 taacattgaccaaatttatagaaaaatgcaccaaca 48
|||| |||||||| ||||||||||||||||||||||
Sbjct: 157 taactttgaccaagtttatagaaaaatgcaccaaca 122
>48988_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
Score = 44.1 bits (22), Expect = 3e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 117 tagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||||| |||||| ||| |||||||| |||||| | |||| ||||||||
Sbjct: 92 tagatgttaat-tattttactacaaacttggtcaaagtaaaagaattttgactt 40
>48987_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
Score = 44.1 bits (22), Expect = 3e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 117 tagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||||| |||||| ||| |||||||| |||||| | |||| ||||||||
Sbjct: 92 tagatgttaat-tattttactacaaacttggtcaaagtaaaagaattttgactt 40
>48986_osa-miR437:pmrd
Length = 213
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
Score = 44.1 bits (22), Expect = 3e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 117 tagatgttaatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||||| |||||| ||| |||||||| |||||| | |||| ||||||||
Sbjct: 92 tagatgttaat-tattttactacaaacttggtcaaagtaaaagaattttgactt 40
>55112_zma-miR437f:pmrd
Length = 342
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 131 tttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||| |||||||| ||||||||||||||||||||||
Sbjct: 41 tttttctataaacttggtcaaagttagagaagtttgactt 2
>55107_zma-miR437a:pmrd
Length = 342
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 131 tttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||| |||||||| ||||||||||||||||||||||
Sbjct: 302 tttttctataaacttggtcaaagttagagaagtttgactt 341
>54519_sbi-miR437w:pmrd
Length = 173
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 131 tttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||||||||||| |||||||||||||||||||||
Sbjct: 134 tttttctaaaaacttggtgaaagttagagaagtttgactt 173
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 21 accaaatttatagaaaaatgcaccaaca 48
||||| |||||||||||||||| |||||
Sbjct: 19 accaagtttatagaaaaatgcatcaaca 46
>54511_sbi-miR437o:pmrd
Length = 175
Score = 63.9 bits (32), Expect = 4e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 116 gtagatgttaatatatttttc-taaaaacttggccaaagttagagaagtttgactt 170
|||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct: 118 gtagctgttaatatattttttataaaaacttagtcaaagttagagaagtttgactt 173
>54505_sbi-miR437i:pmrd
Length = 170
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 118 agatgttaatatatttttctaaaaacttggccaaagttagagaagtttgac 168
||||||||||||| |||||| |||||||| |||||||| |||||||||||
Sbjct: 51 agatgttaatataactttctagaaacttggtcaaagttaaagaagtttgac 1
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| |||||| | ||||||||||||||||||||||
Sbjct: 130 atttttctataaactttgtcaaagttagagaagtttgactt 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 13 taacattgaccaaatttatagaaaaatgcacca 45
|||| ||||| || |||||||||||||||||||
Sbjct: 156 taactttgacaaagtttatagaaaaatgcacca 124
>54504_sbi-miR437g:pmrd
Length = 176
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||| |||||||| ||||||||||||||||||||||
Sbjct: 136 ttttctataaacttggtcaaagttagagaagtttgactt 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 13 taacattgaccaaatttatagaaaaatgcaccaaca 48
|||| |||||||| ||||||||||| |||| |||||
Sbjct: 160 taactttgaccaagtttatagaaaattgcatcaaca 125
>54503_sbi-miR437f:pmrd
Length = 174
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||| |||||||| ||||||||||||||||||||||
Sbjct: 134 ttttctataaacttggtcaaagttagagaagtttgactt 172
Score = 54.0 bits (27), Expect = 3e-08
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 116 gtagatgttaatatatttttctaaaaac-ttggccaaagttagagaagtttgact 169
||||||||||||||||||||||| | || || |||||||||||||||||||||
Sbjct: 55 gtagatgttaatatatttttctacagacttttttcaaagttagagaagtttgact 1
Score = 54.0 bits (27), Expect = 3e-08
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 13 taacattgaccaaatttatagaaaaatgcaccaacagacaacaccaaattagtttaatta 72
|||| |||||||| ||||||||||| |||||||| | ||||| ||||||||||| ||||
Sbjct: 158 taactttgaccaagtttatagaaaagtgcaccaaga-tcaacaacaaattagtttcatta 100
Query: 73 aat 75
|||
Sbjct: 99 aat 97
>54517_sbi-miR437u:pmrd
Length = 164
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 129 tatttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||||| |||||||| |||||||||||||||||||||
Sbjct: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 118 agatgttaatatatttttctaaaaa 142
||||||||||||||||||| |||||
Sbjct: 49 agatgttaatatatttttccaaaaa 25
>54512_sbi-miR437p:pmrd
Length = 188
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 131 tttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||| | |||||||| ||||||||||||||||||||||
Sbjct: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
>55111_zma-miR437e:pmrd
Length = 182
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 128 atatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||||| |||||||| | |||||| |||||||||||||
Sbjct: 138 atatttttctataaacttggtcgaagttaaagaagtttgactt 180
>55108_zma-miR437b:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 124 taatatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||| |||| |||| ||||||| ||||||||||||||||||||||
Sbjct: 121 taatacatttctctagaaacttgttcaaagttagagaagtttgactt 167
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 132 ttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||| |||||||| ||||| || |||||||||||||
Sbjct: 40 ttttctataaacttggtcaaagatacagaagtttgactt 2
>51322_pci-miR437:pmrd
Length = 166
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 133 tttctaaaaacttggccaaagttagagaagtttgactt 170
|||||| |||||||| ||||| ||||||||||||||||
Sbjct: 78 tttctataaacttggtcaaagctagagaagtttgactt 41
>54501_sbi-miR437d:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||| ||| |||||||| |||||||||||||||||||||
Sbjct: 94 attttcctataaacttggttaaagttagagaagtttgactt 134
>54515_sbi-miR437s:pmrd
Length = 176
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 131 tttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||| |||| ||| |||||||| |||||||||||||
Sbjct: 40 tttttctataaacctggacaaagttaaagaagtttgactt 1
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||||| | || ||||||||||||||||||||||
Sbjct: 136 ttttctaaaagcacggtcaaagttagagaagtttgactt 174
>55113_zma-miR437g:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 58 aaattagtttaattaaattttccata 83
||||||||||||||||||| ||||||
Sbjct: 114 aaattagtttaattaaattctccata 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 150 aaagttagagaagtttgact 169
||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgact 173
>55110_zma-miR437d:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||||| ||| ||| | ||||||||||||||||||||
Sbjct: 135 atttttctataaatttgatctaagttagagaagtttgactt 175
>54513_sbi-miR437q:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 150 aaagttagagaagtttgactt 170
|||||||||||||||||||||
Sbjct: 138 aaagttagagaagtttgactt 158
>48328_bdi-miR2504b:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 130 atttttctaaaaacttggccaaagttagagaagtttgactt 170
|||||||||||||||||| || | || |||||||||||||
Sbjct: 88 atttttctaaaaacttggtcagacttgaagaagtttgactt 128
>48318_bdi-miR437:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 127 tatatttttctaaaaacttggccaaagttagagaagtttgactt 170
||||||| ||||||| |||| | || |||||||||||||||||
Sbjct: 70 tatatttgtctaaaagattggtcgaacttagagaagtttgactt 113
