miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54509_sbi-miR437m:pmrd
Length = 174
Score = 345 bits (174), Expect = 7e-96
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1 gtcaaactcatctaactttaaacaagttactagaaaaatgcaccaacatctagaatatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaaactcatctaactttaaacaagttactagaaaaatgcaccaacatctagaatatca 60
Query: 61 aattagcttcattaaattttccacgaaatgtcttggtagtgtgtttattaaactagtata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattagcttcattaaattttccacgaaatgtcttggtagtgtgtttattaaactagtata 120
Query: 121 tgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
>54511_sbi-miR437o:pmrd
Length = 175
Score = 75.8 bits (38), Expect = 1e-14
Identities = 124/148 (83%), Gaps = 6/148 (4%)
Strand = Plus / Plus
Query: 31 tagaaaaatgcaccaacatctagaatatcaaattagcttcattaaattttccacgaa--a 88
||||||||||||||| | |||| || |||||||||| ||||||||||| || | ||| |
Sbjct: 30 tagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatgaaata 89
Query: 89 tgtcttggtagtgtgtttat-taaactagtatatgttaatata-attttctaaaaacttg 146
||||||||||||| ||||| | ||| ||| |||||||||| |||| |||||||||
Sbjct: 90 tgtcttggtagtgcatttatgtgaacctgtagctgttaatatattttttataaaaactta 149
Query: 147 gtcaaaaagttagagaagtttgacttag 174
||| |||||||||||||||||||||||
Sbjct: 150 gtc--aaagttagagaagtttgacttag 175
>54651_sof-miR437:pmrd
Length = 149
Score = 73.8 bits (37), Expect = 4e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 11 tctaactttaaacaagttactagaaaaatgcaccaacatctagaatatcaaattagcttc 70
||||||||| | |||||| |||||||||||||||| ||||||||||||||| ||| | |
Sbjct: 14 tctaactttgatcaagtttatagaaaaatgcaccaaaatctagaatatcaaactagttcc 73
Query: 71 attaaattttcca 83
|||||||| ||||
Sbjct: 74 attaaattctcca 86
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactta 173
||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 110 ttttctaaaaacttgatcaaa--gttagagaagtttgactta 149
>54508_sbi-miR437l:pmrd
Length = 170
Score = 69.9 bits (35), Expect = 6e-13
Identities = 53/58 (91%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 115 agtatatgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgactt 172
|||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct: 115 agtagatgttaatatatttttctaaaaacttggcc--aaagttagagaagtttgactt 170
>54507_sbi-miR437k:pmrd
Length = 172
Score = 63.9 bits (32), Expect = 4e-11
Identities = 41/43 (95%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 132 ttttctaaaaacttggtcaaa--gttagagaagtttgacttag 172
>54504_sbi-miR437g:pmrd
Length = 176
Score = 60.0 bits (30), Expect = 6e-10
Identities = 42/45 (93%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 130 aattttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 134 aattttctataaacttggtcaaa--gttagagaagtttgacttag 176
>54500_sbi-miR437b:pmrd
Length = 171
Score = 58.0 bits (29), Expect = 2e-09
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 1 gtcaaactcatctaactttaaacaagttactagaaaaatgcaccaacatctagaatatca 60
|||||||| ||||||||| | |||||| ||||||||||||||||||||| || ||||
Sbjct: 169 gtcaaacttctctaactttgaccaagtttatagaaaaatgcaccaacatctgaaacatca 110
Query: 61 aatta 65
|||||
Sbjct: 109 aatta 105
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactt 172
||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 133 ttttctataaacttggtcaaa--gttagagaagtttgactt 171
>54505_sbi-miR437i:pmrd
Length = 170
Score = 56.0 bits (28), Expect = 9e-09
Identities = 46/51 (90%), Gaps = 2/51 (3%)
Strand = Plus / Minus
Query: 120 atgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgac 170
|||||||||||| |||||| |||||||||| ||||||| |||||||||||
Sbjct: 49 atgttaatataactttctagaaacttggtc--aaagttaaagaagtttgac 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactt 172
||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 132 ttttctataaactttgtcaaa--gttagagaagtttgactt 170
>54503_sbi-miR437f:pmrd
Length = 174
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 134 ttttctataaacttggtcaaa--gttagagaagtttgacttag 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 152 aaagttagagaagtttgact 171
||||||||||||||||||||
Sbjct: 20 aaagttagagaagtttgact 1
>54502_sbi-miR437e:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 9e-09
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 126 atataattttctaaaaacttggtcaaaaagttagagaagtttgactt 172
||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct: 57 atatatttttctgaaaacttggtcaaa--gttagagaagtttgactt 101
>48988_osa-miR437:pmrd
Length = 213
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 137 ttttctataaacttggtcaaa--gttagagaagtttgacttag 177
>48987_osa-miR437:pmrd
Length = 213
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 137 ttttctataaacttggtcaaa--gttagagaagtttgacttag 177
>48986_osa-miR437:pmrd
Length = 213
Score = 56.0 bits (28), Expect = 9e-09
Identities = 40/43 (93%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 137 ttttctataaacttggtcaaa--gttagagaagtttgacttag 177
>55112_zma-miR437f:pmrd
Length = 342
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactta 173
||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 40 ttttctataaacttggtcaaa--gttagagaagtttgactta 1
>55107_zma-miR437a:pmrd
Length = 342
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactta 173
||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 303 ttttctataaacttggtcaaa--gttagagaagtttgactta 342
>54517_sbi-miR437u:pmrd
Length = 164
Score = 54.0 bits (27), Expect = 4e-08
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 1 gtcaaactcatctaactttaaacaagttactagaaaaatgcaccaacatctagaatatca 60
|||||||| ||||||||| | |||||| ||||||||| | |||| ||||| | ||||
Sbjct: 162 gtcaaacttctctaactttcaccaagtttatagaaaaatacgccaatatctatgacatca 103
Query: 61 aattagcttcattaaattttcca 83
|||||| ||||||||||| ||||
Sbjct: 102 aattagtttcattaaattctcca 80
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactt 172
||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 126 ttttctataaacttggtgaaa--gttagagaagtttgactt 164
>54510_sbi-miR437n:pmrd
Length = 182
Score = 54.0 bits (27), Expect = 4e-08
Identities = 48/54 (88%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 120 atgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgactta 173
|||||| |||| ||||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 130 atgttagtatatttttctacaaacttggttaaa--gttagagaagtttgactta 181
>54519_sbi-miR437w:pmrd
Length = 173
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactt 172
||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 135 ttttctaaaaacttggtgaaa--gttagagaagtttgactt 173
Score = 40.1 bits (20), Expect = 5e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 31 tagaaaaatgcaccaacatctagaatatcaaattagcttcattaaatt 78
|||||||||||| |||||| | || |||||||||| ||||||||||
Sbjct: 29 tagaaaaatgcatcaacatttccaacatcaaattagtatcattaaatt 76
>54518_sbi-miR437v:pmrd
Length = 114
Score = 52.0 bits (26), Expect = 1e-07
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 1 gtcaaactcatctaactttaaacaagttactagaaaaatgcaccaacatctagaatatca 60
|||||||| ||||||||| |||||| |||||||||||| ||||||||| |||||||
Sbjct: 112 gtcaaacttctctaactttgtccaagtttatagaaaaatgcatcaacatctacaatatca 53
Query: 61 aa 62
||
Sbjct: 52 aa 51
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactt 172
||||||| |||||||| |||| ||||||||||||||||||
Sbjct: 76 ttttctataaacttggacaaa--gttagagaagtttgactt 114
>54516_sbi-miR437t:pmrd
Length = 170
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactt 172
||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 132 ttttctataaacttggtcaaa--gttagagaagtttgactt 170
Score = 46.1 bits (23), Expect = 9e-06
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 1 gtcaaactcatctaactttaaacaagttactagaaaaatgcaccaacatct 51
|||||||| ||||||||| | |||||| ||||||||||||| |||||||
Sbjct: 168 gtcaaacttctctaactttgaccaagtttatagaaaaatgcacaaacatct 118
>55109_zma-miR437c:pmrd
Length = 177
Score = 50.1 bits (25), Expect = 6e-07
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 111 aactagtatatgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgac 170
|||| ||| ||| ||||||| ||||| |||| |||||||||| ||||||||||||||||
Sbjct: 120 aacttgtagatgctaatatatttttcaaaaagcttggtcaaa--gttagagaagtttgac 177
>54506_sbi-miR437j:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/40 (92%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 131 attttctaaaaacttggtcaaaaagttagagaagtttgac 170
|||||||| ||||||||||||| ||||||||||||||||
Sbjct: 38 attttctataaacttggtcaaa--gttagagaagtttgac 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 46/53 (86%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 120 atgttaatataattttctaaaaacttggtcaaaaagttagagaagtttgactt 172
|||||||| || |||| |||||| |||||||| ||||||||||||||||||
Sbjct: 122 atgttaatgtattttttgaaaaacatggtcaaa--gttagagaagtttgactt 172
>54501_sbi-miR437d:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 6e-07
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 1 gtcaaactcatctaactttaaacaagttactagaaaaatgcaccaacatctagaatatca 60
|||||||| ||||||||||| |||||| ||| |||||||||||| || || || ||||
Sbjct: 132 gtcaaacttctctaactttaaccaagtttataggaaaatgcaccaatatttacaacatca 73
Query: 61 aattagcttcatt 73
||||| ||||||
Sbjct: 72 cattaggttcatt 60
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 aaagttagagaagtttgactt 172
|||||||||||||||||||||
Sbjct: 114 aaagttagagaagtttgactt 134
>54513_sbi-miR437q:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 151 aaaagttagagaagtttgacttag 174
||||||||||||||||||||||||
Sbjct: 137 aaaagttagagaagtttgacttag 160
>54512_sbi-miR437p:pmrd
Length = 188
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/35 (94%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 140 aaacttggtcaaaaagttagagaagtttgacttag 174
||||||||||||| ||||||||||||||||||||
Sbjct: 156 aaacttggtcaaa--gttagagaagtttgacttag 188
>54515_sbi-miR437s:pmrd
Length = 176
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 aaagttagagaagtttgacttag 174
|||||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgacttag 176
>54514_sbi-miR437r:pmrd
Length = 180
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 aaagttagagaagtttgacttag 174
|||||||||||||||||||||||
Sbjct: 158 aaagttagagaagtttgacttag 180
>55110_zma-miR437d:pmrd
Length = 179
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 aagttagagaagtttgacttag 174
||||||||||||||||||||||
Sbjct: 156 aagttagagaagtttgacttag 177
>55108_zma-miR437b:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 152 aaagttagagaagtttgactta 173
||||||||||||||||||||||
Sbjct: 147 aaagttagagaagtttgactta 168
>51322_pci-miR437:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 133 tttctaaaaacttggtcaaaaagttagagaagtttgactta 173
|||||| ||||||||||||| | |||||||||||||||||
Sbjct: 78 tttctataaacttggtcaaa--gctagagaagtttgactta 40
>55113_zma-miR437g:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 aaaagttagagaagtttgact 171
|||||||||||||||||||||
Sbjct: 153 aaaagttagagaagtttgact 173
>55111_zma-miR437e:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 5e-04
Identities = 38/43 (88%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgacttag 174
||||||| |||||||||| || |||| |||||||||||||||
Sbjct: 142 ttttctataaacttggtcgaa--gttaaagaagtttgacttag 182
