miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54511_sbi-miR437o:pmrd
Length = 175
Score = 347 bits (175), Expect = 2e-96
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 1 aagtcacttttataactttgcaaggtttttagaaaaatgcaccatcctctacaacatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtcacttttataactttgcaaggtttttagaaaaatgcaccatcctctacaacatcaa 60
Query: 61 attagtttcattaaattctctatgaaatatgtcttggtagtgcatttatgtgaacctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attagtttcattaaattctctatgaaatatgtcttggtagtgcatttatgtgaacctgta 120
Query: 121 gctgttaatatattttttataaaaacttagtcaaagttagagaagtttgacttag 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gctgttaatatattttttataaaaacttagtcaaagttagagaagtttgacttag 175
>54504_sbi-miR437g:pmrd
Length = 176
Score = 113 bits (57), Expect = 5e-26
Identities = 126/148 (85%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 25 gtttttagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatg 84
|||| ||||||| |||| || | |||||||||||||| |||||||| ||||||||||||
Sbjct: 147 gtttatagaaaattgcatcaacatctacaacatcaaactagtttcaccaaattctctatg 88
Query: 85 aaatatgtcttggtagtgcatttatgtgaacctgtagctgttaatatattttttataaaa 144
|||||||||||| |||||||||||| ||||| |||| || || |||||| | |||
Sbjct: 87 aaatatgtcttgatagtgcatttatttgaacttgtacacgtgaacatatttct--ctaaa 30
Query: 145 acttagtcaaagttagagaagtttgact 172
||||||||||||||||| ||||||||||
Sbjct: 29 acttagtcaaagttagaaaagtttgact 2
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 143 aaacttagtcaaagttagagaagtttgacttag 175
|||||| ||||||||||||||||||||||||||
Sbjct: 144 aaacttggtcaaagttagagaagtttgacttag 176
>55109_zma-miR437c:pmrd
Length = 177
Score = 101 bits (51), Expect = 2e-22
Identities = 103/119 (86%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 53 aacatcaaattagtttcattaaattctctatgaaatatgtcttggtagtgcatttatgtg 112
||||||||||||||||||||| || |||||||||| ||| ||| | | |||||||| ||
Sbjct: 60 aacatcaaattagtttcattattttttctatgaaatctgttttgatggagcatttatttg 119
Query: 113 aacctgtagctgttaatatattttttataaaaacttagtcaaagttagagaagtttgac 171
||| ||||| || |||||||||||| | |||| ||| ||||||||||||||||||||||
Sbjct: 120 aacttgtagatgctaatatatttttca-aaaagcttggtcaaagttagagaagtttgac 177
>54506_sbi-miR437j:pmrd
Length = 172
Score = 91.7 bits (46), Expect = 2e-19
Identities = 104/122 (85%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 52 caacatcaaattagtttcattaaattctctatgaaatatgtcttggtagtgcatttatgt 111
|||| |||||| ||||||||| |||||| | ||||||||||||| ||| ||||||| |
Sbjct: 52 caacgtcaaatatgtttcattagattctccaagaaatatgtcttgatagcacatttattt 111
Query: 112 gaacctgtagctgttaatatattttttataaaaacttagtcaaagttagagaagtttgac 171
| || ||||| ||||||| |||||||| |||||| | ||||||||||||||||||||||
Sbjct: 112 gtacttgtagatgttaatgtatttttt-gaaaaacatggtcaaagttagagaagtttgac 170
Query: 172 tt 173
||
Sbjct: 171 tt 172
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 143 aaacttagtcaaagttagagaagtttgac 171
|||||| ||||||||||||||||||||||
Sbjct: 29 aaacttggtcaaagttagagaagtttgac 1
>54519_sbi-miR437w:pmrd
Length = 173
Score = 85.7 bits (43), Expect = 1e-17
Identities = 126/152 (82%), Gaps = 5/152 (3%)
Strand = Plus / Plus
Query: 25 gtttttagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatg 84
|||| |||||||||||| || | | | ||||||||||||||| ||||||||||||| ||
Sbjct: 24 gtttatagaaaaatgcatcaacatttccaacatcaaattagtatcattaaattctccgtg 83
Query: 85 aaatatgtcttggtagtgcatttatgtgaacctgtagctgttaata---tattttttata 141
|||||| | | ||||||||||| ||||| ||||| | |||||| | |||||| ||
Sbjct: 84 aaatatat--tcatagtgcatttacttgaacttgtagattttaatagttttttttttcta 141
Query: 142 aaaacttagtcaaagttagagaagtttgactt 173
||||||| || |||||||||||||||||||||
Sbjct: 142 aaaacttggtgaaagttagagaagtttgactt 173
>54507_sbi-miR437k:pmrd
Length = 172
Score = 83.8 bits (42), Expect = 4e-17
Identities = 88/102 (86%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 74 aattctctatgaaatatgtcttggtagtgcatttatgtgaacctgtagctgttaatatat 133
||||||| || ||||||||||| |||||||||||| |||| ||||| ||| | ||||
Sbjct: 72 aattctccataaaatatgtcttattagtgcatttatttgaatttgtagaagttgacatat 131
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgacttag 175
|||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 132 ttttc-taaaaacttggtcaaagttagagaagtttgacttag 172
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 150 gtcaaagttagagaagtttgac 171
||||||||||||||||||||||
Sbjct: 24 gtcaaagttagagaagtttgac 3
>54651_sof-miR437:pmrd
Length = 149
Score = 75.8 bits (38), Expect = 1e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 117 tgtagctgttaatatattttttataaaaacttagtcaaagttagagaagtttgactta 174
||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 92 tgtagatgataatatattttttctaaaaacttgatcaaagttagagaagtttgactta 149
Score = 52.0 bits (26), Expect = 1e-07
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 25 gtttttagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatg 84
|||| ||||||||||||||| |||| || |||||| ||||| |||||||||||| |||
Sbjct: 29 gtttatagaaaaatgcaccaaaatctagaatatcaaactagttccattaaattctccatg 88
Query: 85 aa 86
||
Sbjct: 89 aa 90
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgactt 173
||||| || |||||| ||||||||||||| |||||||||
Sbjct: 41 tttttctataaacttgatcaaagttagagaggtttgactt 2
>54509_sbi-miR437m:pmrd
Length = 174
Score = 75.8 bits (38), Expect = 1e-14
Identities = 124/148 (83%), Gaps = 6/148 (4%)
Strand = Plus / Plus
Query: 30 tagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatgaaata 89
||||||||||||||| | |||| || |||||||||| ||||||||||| || | ||| |
Sbjct: 31 tagaaaaatgcaccaacatctagaatatcaaattagcttcattaaattttccacgaa--a 88
Query: 90 tgtcttggtagtgcatttatgtgaacctgtagctgttaatatattttttataaaaactta 149
||||||||||||| ||||| | ||| ||| |||||||||| |||| |||||||||
Sbjct: 89 tgtcttggtagtgtgtttat-taaactagtatatgttaatata-attttctaaaaacttg 146
Query: 150 gtc--aaagttagagaagtttgacttag 175
||| |||||||||||||||||||||||
Sbjct: 147 gtcaaaaagttagagaagtttgacttag 174
>54503_sbi-miR437f:pmrd
Length = 174
Score = 75.8 bits (38), Expect = 1e-14
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 52 caacatcaaattagtttcattaaattctctatgaaatatgtcttggtagtgcatttatgt 111
||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||| |
Sbjct: 121 caacaacaaattagtttcattaaatccaacatgaaatatgtcttgatagtgcatttattt 62
Query: 112 gaacctgtagctgttaatatattttt 137
| ||||| |||||||||||||||
Sbjct: 61 ggtattgtagatgttaatatattttt 36
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 143 aaacttagtcaaagttagagaagtttgacttag 175
|||||| ||||||||||||||||||||||||||
Sbjct: 142 aaacttggtcaaagttagagaagtttgacttag 174
>54526_sbi-miR1435a:pmrd
Length = 287
Score = 73.8 bits (37), Expect = 4e-14
Identities = 93/112 (83%), Gaps = 6/112 (5%)
Strand = Plus / Minus
Query: 31 agaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatgaaatat 90
||||| ||||| || | ||||||||||||| || |||||||||||| ||| |||||||||
Sbjct: 211 agaaagatgcatcaacatctacaacatcaagtttgtttcattaaatcctccatgaaatat 152
Query: 91 gt------cttggtagtgcatttatgtgaacctgtagctgttaatatatttt 136
|| |||||| ||||||||| ||||| ||||| ||||||||||||||
Sbjct: 151 gtttggtagttggtattgcatttatttgaacttgtagatgttaatatatttt 100
>54508_sbi-miR437l:pmrd
Length = 170
Score = 63.9 bits (32), Expect = 4e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 118 gtagctgttaatatattttttataaaaacttagtcaaagttagagaagtttgactt 173
|||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct: 116 gtagatgttaatatatttttc-taaaaacttggccaaagttagagaagtttgactt 170
>54502_sbi-miR437e:pmrd
Length = 101
Score = 63.9 bits (32), Expect = 4e-11
Identities = 48/52 (92%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 123 tgttaatatat-tttttataaaaacttagtcaaagttagagaagtttgactt 173
||||||||||| ||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 50 tgttaatatatatttttctgaaaacttggtcaaagttagagaagtttgactt 101
>55112_zma-miR437f:pmrd
Length = 342
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 132 attttttataaaaacttagtcaaagttagagaagtttgactta 174
||||||| || |||||| |||||||||||||||||||||||||
Sbjct: 43 attttttctataaacttggtcaaagttagagaagtttgactta 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 50 tacaacatcaaattagtttcattaaat-tctctatgaaatatgtcttggtagtgcattta 108
||||||||||||| ||||||| ||||| | || || |||||| ||||| || ||||||||
Sbjct: 55 tacaacatcaaatcagtttcactaaatatgtcaatcaaatatatcttgatattgcattta 114
Query: 109 t 109
|
Sbjct: 115 t 115
>55107_zma-miR437a:pmrd
Length = 342
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 132 attttttataaaaacttagtcaaagttagagaagtttgactta 174
||||||| || |||||| |||||||||||||||||||||||||
Sbjct: 300 attttttctataaacttggtcaaagttagagaagtttgactta 342
Score = 42.1 bits (21), Expect = 1e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 50 tacaacatcaaattagtttcattaaat-tctctatgaaatatgtcttggtagtgcattta 108
||||||||||||| ||||||| ||||| | || || |||||| ||||| || ||||||||
Sbjct: 288 tacaacatcaaatcagtttcactaaatatgtcaatcaaatatatcttgatattgcattta 229
Query: 109 t 109
|
Sbjct: 228 t 228
>48988_osa-miR437:pmrd
Length = 213
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgacttag 175
||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgacttag 177
>48987_osa-miR437:pmrd
Length = 213
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgacttag 175
||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgacttag 177
>48986_osa-miR437:pmrd
Length = 213
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgacttag 175
||||| || |||||| ||||||||||||||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgacttag 177
>54512_sbi-miR437p:pmrd
Length = 188
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 143 aaacttagtcaaagttagagaagtttgacttag 175
|||||| ||||||||||||||||||||||||||
Sbjct: 156 aaacttggtcaaagttagagaagtttgacttag 188
Score = 46.1 bits (23), Expect = 9e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 50 tacaacatcaaattagtttcattaaattctctatgaaatatgtcttg 96
||||| |||||||||||||||| |||| | | ||||||| |||||||
Sbjct: 133 tacaaaatcaaattagtttcatcaaatccaccatgaaatttgtcttg 87
>54516_sbi-miR437t:pmrd
Length = 170
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgactt 173
||||| || |||||| ||||||||||||||||||||||||
Sbjct: 131 tttttctataaacttggtcaaagttagagaagtttgactt 170
>54505_sbi-miR437i:pmrd
Length = 170
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgactt 173
||||| || |||||| ||||||||||||||||||||||||
Sbjct: 131 tttttctataaactttgtcaaagttagagaagtttgactt 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 143 aaacttagtcaaagttagagaagtttgac 171
|||||| |||||||||| |||||||||||
Sbjct: 29 aaacttggtcaaagttaaagaagtttgac 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 43/49 (87%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 13 taactttg-caaggtttttagaaaaatgcaccatcctctacaacatcaa 60
|||||||| ||| |||| |||||||||||||||| |||||| ||||||
Sbjct: 156 taactttgacaaagtttatagaaaaatgcaccattatctacaccatcaa 108
>54500_sbi-miR437b:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgactt 173
||||| || |||||| ||||||||||||||||||||||||
Sbjct: 132 tttttctataaacttggtcaaagttagagaagtttgactt 171
Score = 50.1 bits (25), Expect = 6e-07
Identities = 71/85 (83%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 25 gtttttagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatg 84
|||| ||||||||||||||| | ||| |||||||||||| |||||||| || | |||
Sbjct: 144 gtttatagaaaaatgcaccaacatctgaaacatcaaatta-tttcattacatctaccatg 86
Query: 85 aaatatgtcttggtagtgcatttat 109
|||||||||||| || ||| |||||
Sbjct: 85 aaatatgtcttgataatgcttttat 61
>54517_sbi-miR437u:pmrd
Length = 164
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 54 acatcaaattagtttcattaaattctc 80
|||||||||||||||||||||||||||
Sbjct: 108 acatcaaattagtttcattaaattctc 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgactt 173
||||| || |||||| || |||||||||||||||||||||
Sbjct: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
>54515_sbi-miR437s:pmrd
Length = 176
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 150 gtcaaagttagagaagtttgacttag 175
||||||||||||||||||||||||||
Sbjct: 151 gtcaaagttagagaagtttgacttag 176
>54514_sbi-miR437r:pmrd
Length = 180
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 143 aaacttagtcaaagttagagaagtttgacttag 175
|||||| | ||||||||||||||||||||||||
Sbjct: 148 aaacttggccaaagttagagaagtttgacttag 180
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 50 tacaacatcaaattagtttcattaaattc 78
||||||||||||||||||| ||| |||||
Sbjct: 52 tacaacatcaaattagttttattcaattc 80
>54510_sbi-miR437n:pmrd
Length = 182
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgactta 174
||||| || |||||| || ||||||||||||||||||||||
Sbjct: 141 tttttctacaaacttggttaaagttagagaagtttgactta 181
>55108_zma-miR437b:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 151 tcaaagttagagaagtttgactta 174
||||||||||||||||||||||||
Sbjct: 145 tcaaagttagagaagtttgactta 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 143 aaacttagtcaaagttagagaagtttgactta 174
|||||| ||||||| || ||||||||||||||
Sbjct: 32 aaacttggtcaaagatacagaagtttgactta 1
>54518_sbi-miR437v:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgactt 173
||||| || |||||| | ||||||||||||||||||||||
Sbjct: 75 tttttctataaacttggacaaagttagagaagtttgactt 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 25 gtttttagaaaaatgcaccatcctctacaacatcaaattagtttcattaaattctctatg 84
|||| |||||||||||| || | ||||||| |||||| |||||||| |||| ||| |||
Sbjct: 87 gtttatagaaaaatgcatcaacatctacaatatcaaagcagtttcatcaaatgctccatg 28
Query: 85 a 85
|
Sbjct: 27 a 27
>51322_pci-miR437:pmrd
Length = 166
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 143 aaacttagtcaaagttagagaagtttgactta 174
|||||| ||||||| |||||||||||||||||
Sbjct: 71 aaacttggtcaaagctagagaagtttgactta 40
>55111_zma-miR437e:pmrd
Length = 182
Score = 46.1 bits (23), Expect = 9e-06
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 126 taatatattttttataaaaacttagtcaaa-gttagagaagtttgacttag 175
|||||| |||||| |||||||||| ||||| ||||||||| ||| ||||||
Sbjct: 51 taatattttttttctaaaaacttaatcaaaagttagagaaatttaacttag 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 134 tttttataaaaacttagtcaaagttagagaagtttgacttag 175
||||| || |||||| ||| |||||| |||||||||||||||
Sbjct: 141 tttttctataaacttggtcgaagttaaagaagtttgacttag 182
>54513_sbi-miR437q:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 153 aaagttagagaagtttgacttag 175
|||||||||||||||||||||||
Sbjct: 138 aaagttagagaagtttgacttag 160
>54501_sbi-miR437d:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 143 aaacttagtcaaagttagagaagtttgactt 173
|||||| || |||||||||||||||||||||
Sbjct: 104 aaacttggttaaagttagagaagtttgactt 134
>55110_zma-miR437d:pmrd
Length = 179
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 aagttagagaagtttgacttag 175
||||||||||||||||||||||
Sbjct: 156 aagttagagaagtttgacttag 177
>55113_zma-miR437g:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 aaagttagagaagtttgact 172
||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgact 173
