miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54512_sbi-miR437p:pmrd
Length = 188
Score = 373 bits (188), Expect = e-104
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 atgtcaaacttctctaacactgaccgagtttgtaggacaaatatatactagcatctacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtcaaacttctctaacactgaccgagtttgtaggacaaatatatactagcatctacaa 60
Query: 61 taccaaataaatgcactatcaagagtcaagacaaatttcatggtggatttgatgaaacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taccaaataaatgcactatcaagagtcaagacaaatttcatggtggatttgatgaaacta 120
Query: 121 atttgattttgtatgtgttggtccattttttcaataaacttggtcaaagttagagaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttgattttgtatgtgttggtccattttttcaataaacttggtcaaagttagagaagtt 180
Query: 181 tgacttag 188
||||||||
Sbjct: 181 tgacttag 188
>54503_sbi-miR437f:pmrd
Length = 174
Score = 99.6 bits (50), Expect = 7e-22
Identities = 123/146 (84%), Gaps = 11/146 (7%)
Strand = Plus / Plus
Query: 43 atatactagcatctacaataccaaataaatgcactatcaagagtcaagacaaatttcatg 102
||||| || ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 40 atatattaacatctacaataccaaataaatgcactatcaaga-------catatttcatg 92
Query: 103 gtggatttgatgaaactaatttgattttgtatgtgttggtccattttttcaataaacttg 162
||||||| |||||||||||||| | ||| | ||||| || |||| | |||||||||
Sbjct: 93 ttggatttaatgaaactaatttgttgttga---tcttggtgcactttt-ctataaacttg 148
Query: 163 gtcaaagttagagaagtttgacttag 188
||||||||||||||||||||||||||
Sbjct: 149 gtcaaagttagagaagtttgacttag 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 164 tcaaagttagagaagtttgact 185
||||||||||||||||||||||
Sbjct: 22 tcaaagttagagaagtttgact 1
>55112_zma-miR437f:pmrd
Length = 342
Score = 93.7 bits (47), Expect = 5e-20
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 113 tgaaactaatttgattttgtatgtgttggtccattttttcaataaacttggtcaaagtta 172
||||||| ||||||| |||||| | || || ||||||||| |||||||||||||||||||
Sbjct: 75 tgaaactgatttgatgttgtatatatttgtgcattttttctataaacttggtcaaagtta 16
Query: 173 gagaagtttgactta 187
|||||||||||||||
Sbjct: 15 gagaagtttgactta 1
>55107_zma-miR437a:pmrd
Length = 342
Score = 93.7 bits (47), Expect = 5e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 113 tgaaactaatttgattttgtatgtgttggtccattttttcaataaacttggtcaaagtta 172
||||||| ||||||| |||||| | || || ||||||||| |||||||||||||||||||
Sbjct: 268 tgaaactgatttgatgttgtatatatttgtgcattttttctataaacttggtcaaagtta 327
Query: 173 gagaagtttgactta 187
|||||||||||||||
Sbjct: 328 gagaagtttgactta 342
>54504_sbi-miR437g:pmrd
Length = 176
Score = 85.7 bits (43), Expect = 1e-17
Identities = 89/103 (86%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 86 tcaagacaaatttcatggtggatttgatgaaactaatttgattttgtatgtgttggtcca 145
|||||||| ||||||| | | ||||| |||||||| |||||| ||||| ||||| | ||
Sbjct: 75 tcaagacatatttcatagagaatttggtgaaactagtttgatgttgtagatgttgatgca 134
Query: 146 ttttttcaataaacttggtcaaagttagagaagtttgacttag 188
|||| | |||||||||||||||||||||||||||||||||||
Sbjct: 135 atttt-ctataaacttggtcaaagttagagaagtttgacttag 176
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 156 aaacttggtcaaagttagagaagtttgact 185
|||||| |||||||||||| ||||||||||
Sbjct: 31 aaacttagtcaaagttagaaaagtttgact 2
>54500_sbi-miR437b:pmrd
Length = 171
Score = 81.8 bits (41), Expect = 2e-16
Identities = 88/101 (87%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 86 tcaagacaaatttcatggtggatttgatgaaactaatttgattttgtatgtgttggtcca 145
|||||||| |||||||||| ||| | |||||| ||||||||| || | ||||||| ||
Sbjct: 73 tcaagacatatttcatggtagatgtaatgaaa-taatttgatgtttcagatgttggtgca 131
Query: 146 ttttttcaataaacttggtcaaagttagagaagtttgactt 186
||||| | |||||||||||||||||||||||||||||||||
Sbjct: 132 ttttt-ctataaacttggtcaaagttagagaagtttgactt 171
>48988_osa-miR437:pmrd
Length = 213
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgacttag 188
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgacttag 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 156 aaacttggtcaaagttagagaagtttgactta 187
||||||||||||||| | |||| |||||||||
Sbjct: 70 aaacttggtcaaagtaaaagaattttgactta 39
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 catctacaataccaaataaatgcactat 79
|||||| |||||||||||||| ||||||
Sbjct: 87 catctaaaataccaaataaatacactat 114
>48987_osa-miR437:pmrd
Length = 213
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgacttag 188
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgacttag 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 156 aaacttggtcaaagttagagaagtttgactta 187
||||||||||||||| | |||| |||||||||
Sbjct: 70 aaacttggtcaaagtaaaagaattttgactta 39
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 catctacaataccaaataaatgcactat 79
|||||| |||||||||||||| ||||||
Sbjct: 87 catctaaaataccaaataaatacactat 114
>48986_osa-miR437:pmrd
Length = 213
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgacttag 188
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgacttag 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 156 aaacttggtcaaagttagagaagtttgactta 187
||||||||||||||| | |||| |||||||||
Sbjct: 70 aaacttggtcaaagtaaaagaattttgactta 39
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 catctacaataccaaataaatgcactat 79
|||||| |||||||||||||| ||||||
Sbjct: 87 catctaaaataccaaataaatacactat 114
>54518_sbi-miR437v:pmrd
Length = 114
Score = 73.8 bits (37), Expect = 4e-14
Identities = 77/89 (86%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 98 tcatggtggatttgatgaaactaatttgattttgtatgtgttggtccattttttcaataa 157
|||||| | ||||||||||||| |||||| ||||| ||||| | ||||||| | ||||
Sbjct: 27 tcatggagcatttgatgaaactgctttgatattgtagatgttgatgcattttt-ctataa 85
Query: 158 acttggtcaaagttagagaagtttgactt 186
|||||| ||||||||||||||||||||||
Sbjct: 86 acttggacaaagttagagaagtttgactt 114
>54516_sbi-miR437t:pmrd
Length = 170
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 131 tttttctataaacttggtcaaagttagagaagtttgactt 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 157 aacttggtcaaagttagagaagtttgac 184
||||||||||||| |||| |||||||||
Sbjct: 28 aacttggtcaaagatagacaagtttgac 1
>54507_sbi-miR437k:pmrd
Length = 172
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgacttag 188
|||||| | |||||||||||||||||||||||||||||||||
Sbjct: 131 tttttctaaaaacttggtcaaagttagagaagtttgacttag 172
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgac 184
|||||| |||| |||||||||||||||||||||||||
Sbjct: 40 tttttctataagtttggtcaaagttagagaagtttgac 3
>54506_sbi-miR437j:pmrd
Length = 172
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 148 ttttcaataaacttggtcaaagttagagaagtttgac 184
||||| |||||||||||||||||||||||||||||||
Sbjct: 37 ttttctataaacttggtcaaagttagagaagtttgac 1
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 156 aaacttggtcaaagttagagaagtttgactt 186
|||| ||||||||||||||||||||||||||
Sbjct: 142 aaacatggtcaaagttagagaagtttgactt 172
>51322_pci-miR437:pmrd
Length = 166
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 148 ttttcaataaacttggtcaaagttagagaagtttgacttag 188
||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 93 ttttcaataaacttggtcaaagttacagaattttgacttag 133
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 149 tttcaataaacttggtcaaagttagagaagtttgactta 187
|||| |||||||||||||||| |||||||||||||||||
Sbjct: 78 tttctataaacttggtcaaagctagagaagtttgactta 40
>54517_sbi-miR437u:pmrd
Length = 164
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
>54514_sbi-miR437r:pmrd
Length = 180
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 149 tttcaataaacttggtcaaagttagagaagtttgacttag 188
|||| |||||||||| ||||||||||||||||||||||||
Sbjct: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
>54510_sbi-miR437n:pmrd
Length = 182
Score = 63.9 bits (32), Expect = 4e-11
Identities = 70/82 (85%), Gaps = 3/82 (3%)
Strand = Plus / Minus
Query: 3 gtcaaacttctctaacactgaccgagtttgtaggacaaatatatactagcatctacaata 62
|||||||||||||||| | ||| ||||||||| ||| |||||||| |||| |||||
Sbjct: 178 gtcaaacttctctaactttaaccaagtttgtag---aaaaatatactaacatcagcaata 122
Query: 63 ccaaataaatgcactatcaaga 84
|||||||| |||||||||||||
Sbjct: 121 ccaaataattgcactatcaaga 100
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactta 187
|||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 141 tttttctacaaacttggttaaagttagagaagtttgactta 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 148 ttttcaataaacttggtcaaagttagaga 176
||||| |||||||||||||||||| ||||
Sbjct: 39 ttttctataaacttggtcaaagttggaga 11
>54505_sbi-miR437i:pmrd
Length = 170
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
|||||| |||||||| ||||||||||||||||||||||||
Sbjct: 131 tttttctataaactttgtcaaagttagagaagtttgactt 170
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 156 aaacttggtcaaagttagagaagtttgac 184
||||||||||||||||| |||||||||||
Sbjct: 29 aaacttggtcaaagttaaagaagtttgac 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 52 catctacaataccaaataaatgcactatcaaga 84
||||| || ||||||||||||| ||||||||||
Sbjct: 47 catcttcagtaccaaataaatgtactatcaaga 79
>54651_sof-miR437:pmrd
Length = 149
Score = 61.9 bits (31), Expect = 2e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 145 attttttcaataaacttggtcaaagttagagaagtttgactta 187
|||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 107 attttttctaaaaacttgatcaaagttagagaagtttgactta 149
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
|||||| ||||||||| ||||||||||||| |||||||||
Sbjct: 41 tttttctataaacttgatcaaagttagagaggtttgactt 2
>54502_sbi-miR437e:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 156 aaacttggtcaaagttagagaagtttgactt 186
|||||||||||||||||||||||||||||||
Sbjct: 71 aaacttggtcaaagttagagaagtttgactt 101
>55111_zma-miR437e:pmrd
Length = 182
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgacttag 188
|||||| |||||||||||| |||||| |||||||||||||||
Sbjct: 141 tttttctataaacttggtcgaagttaaagaagtttgacttag 182
>55109_zma-miR437c:pmrd
Length = 177
Score = 60.0 bits (30), Expect = 6e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgac 184
|||||||| || ||||||||||||||||||||||||||
Sbjct: 140 tttttcaaaaagcttggtcaaagttagagaagtttgac 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 148 ttttcaataaacttggtcaaagttagagaagtttgac 184
||||| |||||||||||||||| | |||||||||||
Sbjct: 37 ttttctataaacttggtcaaagctgaagaagtttgac 1
>54519_sbi-miR437w:pmrd
Length = 173
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 146 ttttttcaataaacttggtcaaagttagagaagtttgactt 186
||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 133 ttttttctaaaaacttggtgaaagttagagaagtttgactt 173
>54511_sbi-miR437o:pmrd
Length = 175
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 156 aaacttggtcaaagttagagaagtttgacttag 188
|||||| ||||||||||||||||||||||||||
Sbjct: 143 aaacttagtcaaagttagagaagtttgacttag 175
Score = 46.1 bits (23), Expect = 1e-05
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 87 caagacaaatttcatggtggatttgatgaaactaatttgattttgta 133
||||||| ||||||| | | |||| |||||||||||||||| |||||
Sbjct: 96 caagacatatttcatagagaatttaatgaaactaatttgatgttgta 50
>54501_sbi-miR437d:pmrd
Length = 136
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 154 ataaacttggtcaaagttagagaagtttgactt 186
||||||||||| |||||||||||||||||||||
Sbjct: 102 ataaacttggttaaagttagagaagtttgactt 134
>55108_zma-miR437b:pmrd
Length = 168
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 148 ttttcaataaacttggtcaaagttagagaagtttgactta 187
||||| |||||||||||||||| || ||||||||||||||
Sbjct: 40 ttttctataaacttggtcaaagatacagaagtttgactta 1
Score = 56.0 bits (28), Expect = 1e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 156 aaacttggtcaaagttagagaagtttgactta 187
||||||| ||||||||||||||||||||||||
Sbjct: 137 aaacttgttcaaagttagagaagtttgactta 168
>54508_sbi-miR437l:pmrd
Length = 170
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
|||||| | |||||||| ||||||||||||||||||||||
Sbjct: 131 tttttctaaaaacttggccaaagttagagaagtttgactt 170
>54515_sbi-miR437s:pmrd
Length = 176
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 162 ggtcaaagttagagaagtttgacttag 188
|||||||||||||||||||||||||||
Sbjct: 150 ggtcaaagttagagaagtttgacttag 176
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
|||||| |||||| ||| |||||||| |||||||||||||
Sbjct: 40 tttttctataaacctggacaaagttaaagaagtttgactt 1
>55110_zma-miR437d:pmrd
Length = 179
Score = 52.0 bits (26), Expect = 2e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgacttag 188
|||||| ||||| ||| || ||||||||||||||||||||||
Sbjct: 136 tttttctataaatttgatctaagttagagaagtttgacttag 177
>54513_sbi-miR437q:pmrd
Length = 160
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 160 ttggtcaaagttagagaagtttgacttag 188
||||| |||||||||||||||||||||||
Sbjct: 132 ttggtaaaagttagagaagtttgacttag 160
>54509_sbi-miR437m:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/35 (94%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 156 aaacttggtcaaa--gttagagaagtttgacttag 188
||||||||||||| ||||||||||||||||||||
Sbjct: 140 aaacttggtcaaaaagttagagaagtttgacttag 174
>48329_bdi-miR2504c:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 147 tttttcaataaacttggtcaaa 168
||||||||||||||||||||||
Sbjct: 30 tttttcaataaacttggtcaaa 9
>55113_zma-miR437g:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 161 tggtcaaagttagagaagtttgact 185
|||| ||||||||||||||||||||
Sbjct: 149 tggtaaaagttagagaagtttgact 173
>48328_bdi-miR2504b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 6e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
|||||| ||||||||||||||| | |||||||||||||
Sbjct: 40 tttttctataaacttggtcaaacatgaagaagtttgactt 1
>48318_bdi-miR437:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 160 ttggtcaaagttagagaagtttgactta 187
|||||| || ||||||||||||||||||
Sbjct: 87 ttggtcgaacttagagaagtttgactta 114
