miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54513_sbi-miR437q:pmrd
Length = 160
Score = 317 bits (160), Expect = 1e-87
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 gtagtcaaccttctcgaactttgacaagttaatagaaaaatataattaacatctacgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagtcaaccttctcgaactttgacaagttaatagaaaaatataattaacatctacgatg 60
Query: 61 ccaaatgaatgcatcatcaaaataaatttgttgtcgtagtcttgtagtcatcgctgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaaatgaatgcatcatcaaaataaatttgttgtcgtagtcttgtagtcatcgctgcctc 120
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
>54504_sbi-miR437g:pmrd
Length = 176
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
|||||||| | ||||| |||||||||||||||||||||||
Sbjct: 137 tttctataaacttggtcaaagttagagaagtttgacttag 176
>54503_sbi-miR437f:pmrd
Length = 174
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
|||||||| | ||||| |||||||||||||||||||||||
Sbjct: 135 tttctataaacttggtcaaagttagagaagtttgacttag 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 37/41 (90%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 33 tagaaaaatataattaacatctacgatgccaaatgaatgca 73
|||||||||||| ||||||||||| || |||||| ||||||
Sbjct: 33 tagaaaaatata-ttaacatctacaataccaaataaatgca 72
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 138 aaagttagagaagtttgact 157
||||||||||||||||||||
Sbjct: 20 aaagttagagaagtttgact 1
>48988_osa-miR437:pmrd
Length = 213
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
|||||||| | ||||| |||||||||||||||||||||||
Sbjct: 138 tttctataaacttggtcaaagttagagaagtttgacttag 177
>48987_osa-miR437:pmrd
Length = 213
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
|||||||| | ||||| |||||||||||||||||||||||
Sbjct: 138 tttctataaacttggtcaaagttagagaagtttgacttag 177
>48986_osa-miR437:pmrd
Length = 213
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
|||||||| | ||||| |||||||||||||||||||||||
Sbjct: 138 tttctataaacttggtcaaagttagagaagtttgacttag 177
>55112_zma-miR437f:pmrd
Length = 342
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 121 tttctatagagttggtaaaagttagagaagtttgactta 159
|||||||| | ||||| ||||||||||||||||||||||
Sbjct: 39 tttctataaacttggtcaaagttagagaagtttgactta 1
>55107_zma-miR437a:pmrd
Length = 342
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgactta 159
|||||||| | ||||| ||||||||||||||||||||||
Sbjct: 304 tttctataaacttggtcaaagttagagaagtttgactta 342
>54517_sbi-miR437u:pmrd
Length = 164
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgactt 158
|||||||| | ||||| |||||||||||||||||||||
Sbjct: 127 tttctataaacttggtgaaagttagagaagtttgactt 164
>54516_sbi-miR437t:pmrd
Length = 170
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgactt 158
|||||||| | ||||| |||||||||||||||||||||
Sbjct: 133 tttctataaacttggtcaaagttagagaagtttgactt 170
>54500_sbi-miR437b:pmrd
Length = 171
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgactt 158
|||||||| | ||||| |||||||||||||||||||||
Sbjct: 134 tttctataaacttggtcaaagttagagaagtttgactt 171
>55113_zma-miR437g:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 133 tggtaaaagttagagaagtttgact 157
|||||||||||||||||||||||||
Sbjct: 149 tggtaaaagttagagaagtttgact 173
>54512_sbi-miR437p:pmrd
Length = 188
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 132 ttggtaaaagttagagaagtttgacttag 160
||||| |||||||||||||||||||||||
Sbjct: 160 ttggtcaaagttagagaagtttgacttag 188
>54507_sbi-miR437k:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 132 ttggtaaaagttagagaagtttgacttag 160
||||| |||||||||||||||||||||||
Sbjct: 144 ttggtcaaagttagagaagtttgacttag 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 132 ttggtaaaagttagagaagtttgac 156
||||| |||||||||||||||||||
Sbjct: 27 ttggtcaaagttagagaagtttgac 3
>54514_sbi-miR437r:pmrd
Length = 180
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
|||||||| | |||| |||||||||||||||||||||||
Sbjct: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
>54510_sbi-miR437n:pmrd
Length = 182
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 132 ttggtaaaagttagagaagtttgactta 159
||||| ||||||||||||||||||||||
Sbjct: 154 ttggttaaagttagagaagtttgactta 181
>54509_sbi-miR437m:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 137 aaaagttagagaagtttgacttag 160
||||||||||||||||||||||||
Sbjct: 151 aaaagttagagaagtttgacttag 174
>54506_sbi-miR437j:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 121 tttctatagagttggtaaaagttagagaagtttgac 156
|||||||| | ||||| |||||||||||||||||||
Sbjct: 36 tttctataaacttggtcaaagttagagaagtttgac 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 133 tggtaaaagttagagaagtttgactt 158
|||| |||||||||||||||||||||
Sbjct: 147 tggtcaaagttagagaagtttgactt 172
>51322_pci-miR437:pmrd
Length = 166
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 120 ctttctatagagttggtaaaagttagagaagtttgactta 159
||||||||| | ||||| |||| |||||||||||||||||
Sbjct: 79 ctttctataaacttggtcaaagctagagaagtttgactta 40
>54519_sbi-miR437w:pmrd
Length = 173
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 132 ttggtaaaagttagagaagtttgactt 158
||||| |||||||||||||||||||||
Sbjct: 147 ttggtgaaagttagagaagtttgactt 173
>54515_sbi-miR437s:pmrd
Length = 176
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 138 aaagttagagaagtttgacttag 160
|||||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgacttag 176
>54511_sbi-miR437o:pmrd
Length = 175
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 138 aaagttagagaagtttgacttag 160
|||||||||||||||||||||||
Sbjct: 153 aaagttagagaagtttgacttag 175
>54502_sbi-miR437e:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 132 ttggtaaaagttagagaagtttgactt 158
||||| |||||||||||||||||||||
Sbjct: 75 ttggtcaaagttagagaagtttgactt 101
>54501_sbi-miR437d:pmrd
Length = 136
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 132 ttggtaaaagttagagaagtttgactt 158
||||| |||||||||||||||||||||
Sbjct: 108 ttggttaaagttagagaagtttgactt 134
>55110_zma-miR437d:pmrd
Length = 179
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 aagttagagaagtttgacttag 160
||||||||||||||||||||||
Sbjct: 156 aagttagagaagtttgacttag 177
>55108_zma-miR437b:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 138 aaagttagagaagtttgactta 159
||||||||||||||||||||||
Sbjct: 147 aaagttagagaagtttgactta 168
>54651_sof-miR437:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 138 aaagttagagaagtttgactta 159
||||||||||||||||||||||
Sbjct: 128 aaagttagagaagtttgactta 149
>54518_sbi-miR437v:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgactt 158
|||||||| | |||| |||||||||||||||||||||
Sbjct: 77 tttctataaacttggacaaagttagagaagtttgactt 114
>54505_sbi-miR437i:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgactt 158
|||||||| | || || |||||||||||||||||||||
Sbjct: 133 tttctataaactttgtcaaagttagagaagtttgactt 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 3 agtcaaccttctcgaactttgac-aagttaatagaaaaat 41
|||||| |||||| ||||||||| ||||| ||||||||||
Sbjct: 169 agtcaaacttctctaactttgacaaagtttatagaaaaat 130
>55109_zma-miR437c:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 132 ttggtaaaagttagagaagtttgac 156
||||| |||||||||||||||||||
Sbjct: 153 ttggtcaaagttagagaagtttgac 177
>54508_sbi-miR437l:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 138 aaagttagagaagtttgactt 158
|||||||||||||||||||||
Sbjct: 150 aaagttagagaagtttgactt 170
>55111_zma-miR437e:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
|||||||| | ||||| |||||| |||||||||||||||
Sbjct: 143 tttctataaacttggtcgaagttaaagaagtttgacttag 182
