miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54514_sbi-miR437r:pmrd
Length = 180
Score = 357 bits (180), Expect = 2e-99
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 1 agtaaaacttctcttattttgaccaagtctatagaaaaatgtactaatatttacaacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtaaaacttctcttattttgaccaagtctatagaaaaatgtactaatatttacaacatc 60
Query: 61 aaattagttttattcaattcaccatgcaatgtgttggagagtgaacttatttggtattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaattagttttattcaattcaccatgcaatgtgttggagagtgaacttatttggtattac 120
Query: 121 agtataggtgccaatgtatatttctataaacttggccaaagttagagaagtttgacttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtataggtgccaatgtatatttctataaacttggccaaagttagagaagtttgacttag 180
>54504_sbi-miR437g:pmrd
Length = 176
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137 tttctataaacttggtcaaagttagagaagtttgacttag 176
Score = 52.0 bits (26), Expect = 1e-07
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaatgtactaatatttacaacatcaaat 64
|||||||||| | ||||||||||| ||||||||| || | || || ||||||||||||
Sbjct: 169 aaacttctctaactttgaccaagtttatagaaaattgcatcaacatctacaacatcaaac 110
Query: 65 tagttt 70
||||||
Sbjct: 109 tagttt 104
>54503_sbi-miR437f:pmrd
Length = 174
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 135 tttctataaacttggtcaaagttagagaagtttgacttag 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaa 38
|||||||||| | ||||||||||| |||||||||
Sbjct: 167 aaacttctctaactttgaccaagtttatagaaaa 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157 caaagttagagaagtttgact 177
|||||||||||||||||||||
Sbjct: 21 caaagttagagaagtttgact 1
>48988_osa-miR437:pmrd
Length = 213
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 138 tttctataaacttggtcaaagttagagaagtttgacttag 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaat 40
|||||||||| | ||||||||||| |||||||||||
Sbjct: 170 aaacttctctaactttgaccaagtttatagaaaaat 135
>48987_osa-miR437:pmrd
Length = 213
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 138 tttctataaacttggtcaaagttagagaagtttgacttag 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaat 40
|||||||||| | ||||||||||| |||||||||||
Sbjct: 170 aaacttctctaactttgaccaagtttatagaaaaat 135
>48986_osa-miR437:pmrd
Length = 213
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 138 tttctataaacttggtcaaagttagagaagtttgacttag 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaat 40
|||||||||| | ||||||||||| |||||||||||
Sbjct: 170 aaacttctctaactttgaccaagtttatagaaaaat 135
>55112_zma-miR437f:pmrd
Length = 342
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgactta 179
||||||||||||||| |||||||||||||||||||||||
Sbjct: 39 tttctataaacttggtcaaagttagagaagtttgactta 1
Score = 61.9 bits (31), Expect = 2e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 5 aaacttctcttattttgaccaagtctatag-aaaaatgtactaatatttacaacatcaaa 63
|||||||||| | ||||||||||| ||||| ||||||| || ||||| ||||||||||||
Sbjct: 7 aaacttctctaactttgaccaagtttatagaaaaaatgcacaaatatatacaacatcaaa 66
Query: 64 ttagttt 70
| |||||
Sbjct: 67 tcagttt 73
>55107_zma-miR437a:pmrd
Length = 342
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactta 179
||||||||||||||| |||||||||||||||||||||||
Sbjct: 304 tttctataaacttggtcaaagttagagaagtttgactta 342
Score = 61.9 bits (31), Expect = 2e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatag-aaaaatgtactaatatttacaacatcaaa 63
|||||||||| | ||||||||||| ||||| ||||||| || ||||| ||||||||||||
Sbjct: 336 aaacttctctaactttgaccaagtttatagaaaaaatgcacaaatatatacaacatcaaa 277
Query: 64 ttagttt 70
| |||||
Sbjct: 276 tcagttt 270
>54518_sbi-miR437v:pmrd
Length = 114
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
||||||||||||||| ||||||||||||||||||||||
Sbjct: 77 tttctataaacttggacaaagttagagaagtttgactt 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaatg 41
|||||||||| | |||| |||||| ||||||||||||
Sbjct: 109 aaacttctctaactttgtccaagtttatagaaaaatg 73
>54516_sbi-miR437t:pmrd
Length = 170
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
||||||||||||||| ||||||||||||||||||||||
Sbjct: 133 tttctataaacttggtcaaagttagagaagtttgactt 170
Score = 50.1 bits (25), Expect = 6e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaatg 41
|||||||||| | ||||||||||| ||||||||||||
Sbjct: 165 aaacttctctaactttgaccaagtttatagaaaaatg 129
>54508_sbi-miR437l:pmrd
Length = 170
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
|||||| |||||||||||||||||||||||||||||||
Sbjct: 133 tttctaaaaacttggccaaagttagagaagtttgactt 170
>54500_sbi-miR437b:pmrd
Length = 171
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
||||||||||||||| ||||||||||||||||||||||
Sbjct: 134 tttctataaacttggtcaaagttagagaagtttgactt 171
Score = 52.0 bits (26), Expect = 1e-07
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaatgtactaatatttacaacatcaaat 64
|||||||||| | ||||||||||| |||||||||||| || || || | ||||||||||
Sbjct: 166 aaacttctctaactttgaccaagtttatagaaaaatgcaccaacatctgaaacatcaaat 107
Query: 65 ta 66
||
Sbjct: 106 ta 105
>54512_sbi-miR437p:pmrd
Length = 188
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
|||| |||||||||| ||||||||||||||||||||||||
Sbjct: 149 tttcaataaacttggtcaaagttagagaagtttgacttag 188
>54507_sbi-miR437k:pmrd
Length = 172
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
|||||| |||||||| ||||||||||||||||||||||||
Sbjct: 133 tttctaaaaacttggtcaaagttagagaagtttgacttag 172
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 135 tgtatatttctataaacttggccaaagttagagaagtttgac 176
||||| ||||||||| |||| ||||||||||||||||||||
Sbjct: 44 tgtatttttctataagtttggtcaaagttagagaagtttgac 3
Score = 40.1 bits (20), Expect = 6e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaat 40
|||||||||| | ||||||||||| | |||||||||
Sbjct: 165 aaacttctctaactttgaccaagtttttagaaaaat 130
>54506_sbi-miR437j:pmrd
Length = 172
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgac 176
||||||||||||||| ||||||||||||||||||||
Sbjct: 36 tttctataaacttggtcaaagttagagaagtttgac 1
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 148 aaacttggccaaagttagagaagtttgactt 178
|||| ||| ||||||||||||||||||||||
Sbjct: 142 aaacatggtcaaagttagagaagtttgactt 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 5 aaacttctcttattttgaccaagtctatagaaaa 38
|||||||||| | ||||||||||| |||||||||
Sbjct: 4 aaacttctctaactttgaccaagtttatagaaaa 37
>54517_sbi-miR437u:pmrd
Length = 164
Score = 61.9 bits (31), Expect = 2e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 136 gtatatttctataaacttggccaaagttagagaagtttgactt 178
|||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 122 gtatttttctataaacttggtgaaagttagagaagtttgactt 164
Score = 52.0 bits (26), Expect = 1e-07
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaatgtactaatatttacaacatcaaat 64
|||||||||| | ||| ||||||| ||||||||||| | ||||| || |||||||||
Sbjct: 159 aaacttctctaactttcaccaagtttatagaaaaatacgccaatatctatgacatcaaat 100
Query: 65 tagttttattcaattcaccatg 86
|||||| ||| ||||| |||||
Sbjct: 99 tagtttcattaaattctccatg 78
>54501_sbi-miR437d:pmrd
Length = 136
Score = 61.9 bits (31), Expect = 2e-10
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaatgtactaatatttacaacatcaaat 64
|||||||||| | ||| ||||||| ||||| |||||| || |||||||||||||||| ||
Sbjct: 129 aaacttctctaactttaaccaagtttataggaaaatgcaccaatatttacaacatcacat 70
Query: 65 tag 67
|||
Sbjct: 69 tag 67
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 144 ctataaacttggccaaagttagagaagtttgactt 178
|||||||||||| |||||||||||||||||||||
Sbjct: 100 ctataaacttggttaaagttagagaagtttgactt 134
>51322_pci-miR437:pmrd
Length = 166
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgactta 179
||||||||||||||| ||||| |||||||||||||||||
Sbjct: 78 tttctataaacttggtcaaagctagagaagtttgactta 40
>54505_sbi-miR437i:pmrd
Length = 170
Score = 60.0 bits (30), Expect = 6e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
||||||||||||| | ||||||||||||||||||||||
Sbjct: 133 tttctataaactttgtcaaagttagagaagtttgactt 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgac 176
|||||| |||||||| |||||||| |||||||||||
Sbjct: 36 tttctagaaacttggtcaaagttaaagaagtttgac 1
Score = 46.1 bits (23), Expect = 9e-06
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 5 aaacttctcttattttgaccaagtctatagaaaaatgtactaatatttacaacatcaaat 64
|||||||||| | |||||| |||| |||||||||||| || | ||| |||| |||| |||
Sbjct: 165 aaacttctctaactttgacaaagtttatagaaaaatgcaccattatctacaccatc-aat 107
Query: 65 tagtttt 71
|||||||
Sbjct: 106 tagtttt 100
>55111_zma-miR437e:pmrd
Length = 182
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
||||||||||||||| | |||||| |||||||||||||||
Sbjct: 143 tttctataaacttggtcgaagttaaagaagtttgacttag 182
>55108_zma-miR437b:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgactta 179
||||||||||||||| ||||| || ||||||||||||||
Sbjct: 39 tttctataaacttggtcaaagatacagaagtttgactta 1
Score = 50.1 bits (25), Expect = 6e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 143 tctataaacttggccaaagttagagaagtttgactta 179
|||| ||||||| |||||||||||||||||||||||
Sbjct: 132 tctagaaacttgttcaaagttagagaagtttgactta 168
>54651_sof-miR437:pmrd
Length = 149
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactta 179
|||||| ||||||| |||||||||||||||||||||||
Sbjct: 111 tttctaaaaacttgatcaaagttagagaagtttgactta 149
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
|||||||||||||| |||||||||||| |||||||||
Sbjct: 39 tttctataaacttgatcaaagttagagaggtttgactt 2
>54510_sbi-miR437n:pmrd
Length = 182
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactta 179
|||||| |||||||| ||||||||||||||||||||||
Sbjct: 143 tttctacaaacttggttaaagttagagaagtttgactta 181
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagaga 168
||||||||||||||| ||||||| ||||
Sbjct: 38 tttctataaacttggtcaaagttggaga 11
>54502_sbi-miR437e:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 148 aaacttggccaaagttagagaagtttgactt 178
|||||||| ||||||||||||||||||||||
Sbjct: 71 aaacttggtcaaagttagagaagtttgactt 101
>54519_sbi-miR437w:pmrd
Length = 173
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
|||||| |||||||| |||||||||||||||||||||
Sbjct: 136 tttctaaaaacttggtgaaagttagagaagtttgactt 173
Score = 46.1 bits (23), Expect = 9e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 22 accaagtctatagaaaaatgtactaatatttacaacatcaaattagt 68
||||||| |||||||||||| | || |||| |||||||||||||||
Sbjct: 19 accaagtttatagaaaaatgcatcaacatttccaacatcaaattagt 65
>54515_sbi-miR437s:pmrd
Length = 176
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgactt 178
||||||||||| ||| |||||||| |||||||||||||
Sbjct: 38 tttctataaacctggacaaagttaaagaagtttgactt 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 caaagttagagaagtttgacttag 180
||||||||||||||||||||||||
Sbjct: 153 caaagttagagaagtttgacttag 176
>54511_sbi-miR437o:pmrd
Length = 175
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 148 aaacttggccaaagttagagaagtttgacttag 180
|||||| | ||||||||||||||||||||||||
Sbjct: 143 aaacttagtcaaagttagagaagtttgacttag 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 52 tacaacatcaaattagttttattcaattc 80
||||||||||||||||||| ||| |||||
Sbjct: 50 tacaacatcaaattagtttcattaaattc 78
>55110_zma-miR437d:pmrd
Length = 179
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
|||||||||| ||| | ||||||||||||||||||||||
Sbjct: 138 tttctataaatttgatctaagttagagaagtttgacttag 177
>54513_sbi-miR437q:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 141 tttctataaacttggccaaagttagagaagtttgacttag 180
|||||||| | |||| |||||||||||||||||||||||
Sbjct: 121 tttctatagagttggtaaaagttagagaagtttgacttag 160
>54509_sbi-miR437m:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 158 aaagttagagaagtttgacttag 180
|||||||||||||||||||||||
Sbjct: 152 aaagttagagaagtttgacttag 174
>55109_zma-miR437c:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 151 cttggccaaagttagagaagtttgac 176
||||| ||||||||||||||||||||
Sbjct: 152 cttggtcaaagttagagaagtttgac 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 141 tttctataaacttggccaaagttagagaagtttgac 176
||||||||||||||| ||||| | |||||||||||
Sbjct: 36 tttctataaacttggtcaaagctgaagaagtttgac 1
>48328_bdi-miR2504b:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 18 tttgaccaagtctatagaaaaatgtactaa 47
||||||||||| ||||||||||| ||||||
Sbjct: 19 tttgaccaagtttatagaaaaatctactaa 48
>55113_zma-miR437g:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 aaagttagagaagtttgact 177
||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgact 173
