miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54517_sbi-miR437u:pmrd
Length = 164
Score = 283 bits (143), Expect = 2e-77
Identities = 157/164 (95%)
Strand = Plus / Plus
Query: 1 ttaaacctctaactgtgactgannnnnnnggaaaaatatattaacatctgcaagctgaaa 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 ttaaacctctaactgtgactgatttttttggaaaaatatattaacatctgcaagctgaaa 60
Query: 61 taagtgcactatcaagacatggagaatttaatgaaactaatttgatgtcatagatattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taagtgcactatcaagacatggagaatttaatgaaactaatttgatgtcatagatattgg 120
Query: 121 cgtatttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtatttttctataaacttggtgaaagttagagaagtttgactt 164
>54651_sof-miR437:pmrd
Length = 149
Score = 85.7 bits (43), Expect = 1e-17
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 78 catggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaac 137
|||||||||||||||| ||||| |||||| | ||||| |||| | ||||||||||||||
Sbjct: 88 catggagaatttaatggaactagtttgatattctagattttggtgcatttttctataaac 29
Query: 138 ttggtgaaagttagagaagtttgactt 164
||| | ||||||||||| |||||||||
Sbjct: 28 ttgatcaaagttagagaggtttgactt 2
Score = 56.0 bits (28), Expect = 9e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||| ||||||| | |||||||||||||||||||||
Sbjct: 109 tttttctaaaaacttgatcaaagttagagaagtttgactt 148
>54500_sbi-miR437b:pmrd
Length = 171
Score = 79.8 bits (40), Expect = 6e-16
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 89 taatgaaactaatttgatgtcatagatattggcgtatttttctataaacttggtgaaagt 148
|||||||| ||||||||||| |||| |||| | ||||||||||||||||||| |||||
Sbjct: 97 taatgaaa-taatttgatgtttcagatgttggtgcatttttctataaacttggtcaaagt 155
Query: 149 tagagaagtttgactt 164
||||||||||||||||
Sbjct: 156 tagagaagtttgactt 171
>54504_sbi-miR437g:pmrd
Length = 176
Score = 77.8 bits (39), Expect = 2e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 82 gagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaacttgg 141
|||||||| |||||||| |||||||| ||||| ||| | | ||||||||||||||||
Sbjct: 92 gagaatttggtgaaactagtttgatgttgtagatgttgatgcaattttctataaacttgg 151
Query: 142 tgaaagttagagaagtttgactt 164
| |||||||||||||||||||||
Sbjct: 152 tcaaagttagagaagtttgactt 174
>54501_sbi-miR437d:pmrd
Length = 136
Score = 77.8 bits (39), Expect = 2e-15
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 90 aatgaaactaatttgatgtcatagatattggcgtatttttctataaacttggtgaaagtt 149
|||||| ||||| |||||| || ||||||| | ||||| ||||||||||||| ||||||
Sbjct: 60 aatgaacctaatgtgatgttgtaaatattggtgcattttcctataaacttggttaaagtt 119
Query: 150 agagaagtttgactt 164
|||||||||||||||
Sbjct: 120 agagaagtttgactt 134
>54516_sbi-miR437t:pmrd
Length = 170
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 124 atttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 130 atttttctataaacttggtcaaagttagagaagtttgactt 170
>54503_sbi-miR437f:pmrd
Length = 174
Score = 73.8 bits (37), Expect = 4e-14
Identities = 69/79 (87%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 86 atttaatgaaactaatttgatgtcatagatattggcgtatttttctataaacttggtgaa 145
||||||||||||||||||| ||| ||| |||| | | ||||||||||||||||| ||
Sbjct: 97 atttaatgaaactaatttgttgtt---gatcttggtgcacttttctataaacttggtcaa 153
Query: 146 agttagagaagtttgactt 164
|||||||||||||||||||
Sbjct: 154 agttagagaagtttgactt 172
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 144 aaagttagagaagtttgact 163
||||||||||||||||||||
Sbjct: 20 aaagttagagaagtttgact 1
>48988_osa-miR437:pmrd
Length = 213
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 124 atttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>48987_osa-miR437:pmrd
Length = 213
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 124 atttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>48986_osa-miR437:pmrd
Length = 213
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 124 atttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaagttagagaagtttgactt 175
>55112_zma-miR437f:pmrd
Length = 342
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 41 tttttctataaacttggtcaaagttagagaagtttgactt 2
>55107_zma-miR437a:pmrd
Length = 342
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 302 tttttctataaacttggtcaaagttagagaagtttgactt 341
>54519_sbi-miR437w:pmrd
Length = 173
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 134 tttttctaaaaacttggtgaaagttagagaagtttgactt 173
Score = 52.0 bits (26), Expect = 1e-07
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 81 ggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaacttg 140
|||||||||||||| ||||||||||||| | || ||| | |||||||||||||||||
Sbjct: 80 ggagaatttaatgatactaatttgatgttggaaatgttgatgcatttttctataaacttg 21
Query: 141 gt 142
||
Sbjct: 20 gt 19
>54518_sbi-miR437v:pmrd
Length = 114
Score = 69.9 bits (35), Expect = 6e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 78 catggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaac 137
||||||| |||| |||||||| |||||| | ||||| ||| | ||||||||||||||
Sbjct: 28 catggagcatttgatgaaactgctttgatattgtagatgttgatgcatttttctataaac 87
Query: 138 ttggtgaaagttagagaagtttgactt 164
|||| |||||||||||||||||||||
Sbjct: 88 ttggacaaagttagagaagtttgactt 114
>54510_sbi-miR437n:pmrd
Length = 182
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 139 tatttttctacaaacttggttaaagttagagaagtttgactt 180
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 126 ttttctataaacttggtgaaagttagaga 154
||||||||||||||||| |||||| ||||
Sbjct: 39 ttttctataaacttggtcaaagttggaga 11
>54507_sbi-miR437k:pmrd
Length = 172
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 129 tatttttctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 60.0 bits (30), Expect = 5e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 117 ttggcgtatttttctataaacttggtgaaagttagagaagtttgac 162
|||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 48 ttggtgtatttttctataagtttggtcaaagttagagaagtttgac 3
>54505_sbi-miR437i:pmrd
Length = 170
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 111 tagatattggcgtatttttctataaacttggtgaaagttagagaagtttgactt 164
|||||| ||| | |||||||||||||||| || |||||||||||||||||||||
Sbjct: 117 tagataatggtgcatttttctataaactttgtcaaagttagagaagtttgactt 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 127 tttctataaacttggtgaaagttagagaagtttgac 162
|||||| ||||||||| ||||||| |||||||||||
Sbjct: 36 tttctagaaacttggtcaaagttaaagaagtttgac 1
>54506_sbi-miR437j:pmrd
Length = 172
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 126 ttttctataaacttggtgaaagttagagaagtttgac 162
||||||||||||||||| |||||||||||||||||||
Sbjct: 37 ttttctataaacttggtcaaagttagagaagtttgac 1
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 134 aaacttggtgaaagttagagaagtttgactt 164
|||| |||| |||||||||||||||||||||
Sbjct: 142 aaacatggtcaaagttagagaagtttgactt 172
>54512_sbi-miR437p:pmrd
Length = 188
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 147 tttttcaataaacttggtcaaagttagagaagtttgactt 186
>54514_sbi-miR437r:pmrd
Length = 180
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 122 gtatttttctataaacttggtgaaagttagagaagtttgactt 164
|||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 136 gtatatttctataaacttggccaaagttagagaagtttgactt 178
Score = 52.0 bits (26), Expect = 1e-07
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 78 catggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaac 137
||||| ||||| ||| ||||||||||||||| || ||||| | ||||||||||| ||
Sbjct: 86 catggtgaattgaataaaactaatttgatgttgtaaatattagtacatttttctatagac 27
Query: 138 ttggtgaaagttagagaagttt 159
||||| ||| | ||||||||||
Sbjct: 26 ttggtcaaaataagagaagttt 5
>55111_zma-miR437e:pmrd
Length = 182
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||||||||||||||| |||||| |||||||||||||
Sbjct: 139 tatttttctataaacttggtcgaagttaaagaagtttgactt 180
>54508_sbi-miR437l:pmrd
Length = 170
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
|||||||||| |||||||| |||||||||||||||||||||
Sbjct: 129 tatttttctaaaaacttggccaaagttagagaagtttgactt 170
>54502_sbi-miR437e:pmrd
Length = 101
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 123 tatttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 60 tatttttctgaaaacttggtcaaagttagagaagtttgactt 101
>51322_pci-miR437:pmrd
Length = 166
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 127 tttctataaacttggtgaaagttagagaagtttgactt 164
|||||||||||||||| |||| ||||||||||||||||
Sbjct: 78 tttctataaacttggtcaaagctagagaagtttgactt 41
Score = 46.1 bits (23), Expect = 8e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 126 ttttctataaacttggtgaaagttagagaagtttgactt 164
||||| ||||||||||| ||||||| |||| ||||||||
Sbjct: 93 ttttcaataaacttggtcaaagttacagaattttgactt 131
>55113_zma-miR437g:pmrd
Length = 174
Score = 58.0 bits (29), Expect = 2e-09
Identities = 72/85 (84%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 79 atggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaact 138
|||||||||||||| |||||||||| || | |||||| || | ||| | ||||| |||
Sbjct: 90 atggagaatttaattaaactaattttatattatagatgtttgtgta-tattctacaaagc 148
Query: 139 tggtgaaagttagagaagtttgact 163
|||| ||||||||||||||||||||
Sbjct: 149 tggtaaaagttagagaagtttgact 173
>55108_zma-miR437b:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 126 ttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||||||| |||| || |||||||||||||
Sbjct: 40 ttttctataaacttggtcaaagatacagaagtttgactt 2
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 124 atttttctataaacttggtgaaagttagagaagtttgactt 164
|||| |||| ||||||| | |||||||||||||||||||||
Sbjct: 127 atttctctagaaacttgttcaaagttagagaagtttgactt 167
>54511_sbi-miR437o:pmrd
Length = 175
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 82 gagaatttaatgaaactaatttgatgt 108
|||||||||||||||||||||||||||
Sbjct: 80 gagaatttaatgaaactaatttgatgt 54
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 125 tttttctataaacttggtgaaagttagagaagtttgactt 164
||||| || |||||| || |||||||||||||||||||||
Sbjct: 134 tttttataaaaacttagtcaaagttagagaagtttgactt 173
>54509_sbi-miR437m:pmrd
Length = 174
Score = 54.0 bits (27), Expect = 3e-08
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 80 tggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaactt 139
|||| ||||||||||| |||||||||| | ||||| |||| | ||||||||| |||||
Sbjct: 83 tggaaaatttaatgaagctaatttgatattctagatgttggtgcatttttctagtaactt 24
Query: 140 ggtgaaagttagagaagtttgac 162
| | ||||||||| ||||||||
Sbjct: 23 gtttaaagttagatgagtttgac 1
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 126 ttttctataaacttggtgaaa--gttagagaagtttgactt 164
||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 132 ttttctaaaaacttggtcaaaaagttagagaagtttgactt 172
>54515_sbi-miR437s:pmrd
Length = 176
Score = 52.0 bits (26), Expect = 1e-07
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 83 agaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaacttggt 142
||||| |||||||||| || |||| | ||||| || | || ||||||||||||| |||
Sbjct: 82 agaatctaatgaaactcatctgatattctagatgtttgagtgtttttctataaacctgga 23
Query: 143 gaaagttagagaagtttgactt 164
||||||| |||||||||||||
Sbjct: 22 caaagttaaagaagtttgactt 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 144 aaagttagagaagtttgactt 164
|||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgactt 174
>54513_sbi-miR437q:pmrd
Length = 160
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 127 tttctataaacttggtgaaagttagagaagtttgactt 164
|||||||| | ||||| |||||||||||||||||||||
Sbjct: 121 tttctatagagttggtaaaagttagagaagtttgactt 158
>55110_zma-miR437d:pmrd
Length = 179
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 124 atttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 135 atttttctataaatttgatctaagttagagaagtttgactt 175
>55109_zma-miR437c:pmrd
Length = 177
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 123 tatttttctataaacttggtgaaagttagagaagtttgac 162
|||||||| | || |||||| |||||||||||||||||||
Sbjct: 138 tatttttcaaaaagcttggtcaaagttagagaagtttgac 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 126 ttttctataaacttggtgaaagttagagaagtttgac 162
||||||||||||||||| |||| | |||||||||||
Sbjct: 37 ttttctataaacttggtcaaagctgaagaagtttgac 1
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 89 taatgaaactaatttgatgt 108
||||||||||||||||||||
Sbjct: 80 taatgaaactaatttgatgt 61
>48318_bdi-miR437:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 8e-06
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 90 aatgaaactaatttgatgtcatagatattggcgtatttttctataaacttggtgaaagtt 149
||||||||||||||| ||||||| | |||| ||||| |||| || ||||| || ||
Sbjct: 39 aatgaaactaatttggtgtcataagtcttggtatatttgtctaaaagattggtcgaactt 98
Query: 150 agagaagtttgactt 164
|||||||||||||||
Sbjct: 99 agagaagtttgactt 113
>54526_sbi-miR1435a:pmrd
Length = 287
Score = 44.1 bits (22), Expect = 3e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 78 catggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaac 137
||||||| |||||||||||| || ||||||| ||||| ||| | || ||||| |||||
Sbjct: 158 catggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatctttctgtaaac 217
Query: 138 ttggtgaaag 147
||||| ||||
Sbjct: 218 ttggtcaaag 227
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 33 aaaatatattaacatctgcaagctgaaataagtgca 68
||||||||||||||||| |||| | |||||| ||||
Sbjct: 100 aaaatatattaacatctacaagttcaaataaatgca 135
>48328_bdi-miR2504b:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 124 atttttctataaacttggtgaaagttagagaagtttgactt 164
||||||||||||||||||| ||| | |||||||||||||
Sbjct: 41 atttttctataaacttggtcaaacatgaagaagtttgactt 1
