miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42834_zma-MIR529:mirbase
Length = 126
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 87 tgatgaaggctgtaccctctctcttcttct 116
||||||||||||||||||||||||||||||
Sbjct: 97 tgatgaaggctgtaccctctctcttcttct 126
Score = 52.0 bits (26), Expect = 9e-08
Identities = 61/71 (85%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 gagaagagagagagtacagcctta---ccatgtacacacactccaatctcaacagtctct 59
||||||||||||||||||||||| |||||||||||| || || ||||||||||||
Sbjct: 1 gagaagagagagagtacagccttgttgccatgtacacac--tcagatatcaacagtctct 58
Query: 60 tatatatgctg 70
||||| |||||
Sbjct: 59 tatatttgctg 69
>42103_osa-MIR529a:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 87 tgatgaaggctgtaccctctctcttcttc 115
|||||||||||||||||||||||||||||
Sbjct: 71 tgatgaaggctgtaccctctctcttcttc 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 agaagagagagagtacagcctta 26
|||||||||||||||||||||||
Sbjct: 3 agaagagagagagtacagcctta 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 aaggctgtaccctctctcttcttc 115
|||||||||| |||||||||||||
Sbjct: 24 aaggctgtactctctctcttcttc 1
>41807_bdi-MIR529:mirbase
Length = 107
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gggagaagagagagagtacagcctta 26
||||||||||||||||||||||||||
Sbjct: 14 gggagaagagagagagtacagcctta 39
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 92 aaggctgtaccctctctcttcttct 116
|||||||||||||||||||||||||
Sbjct: 68 aaggctgtaccctctctcttcttct 92
>42104_osa-MIR529b:mirbase
Length = 138
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 ggagaagagagagagtacagc 22
|||||||||||||||||||||
Sbjct: 17 ggagaagagagagagtacagc 37
>39508_ppt-MIR529f:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4 agaagagagagagtacagcc 23
||||||||||||||||||||
Sbjct: 30 agaagagagagagtacagcc 49
>39507_ppt-MIR529e:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4 agaagagagagagtacagcc 23
||||||||||||||||||||
Sbjct: 30 agaagagagagagtacagcc 49
