miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54526_sbi-miR1435a:pmrd
Length = 287
Score = 569 bits (287), Expect = e-163
Identities = 287/287 (100%)
Strand = Plus / Plus
Query: 1 gttgtattaatgcacccatcatattatttactctgttccaaattataggttaatttagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgtattaatgcacccatcatattatttactctgttccaaattataggttaatttagct 60
Query: 61 ttttcttaagtcaaacttttctaattttgacaattttagaaaatatattaacatctacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttcttaagtcaaacttttctaattttgacaattttagaaaatatattaacatctacaa 120
Query: 121 gttcaaataaatgcaataccaactaccaaacatatttcatggaggatttaatgaaacaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttcaaataaatgcaataccaactaccaaacatatttcatggaggatttaatgaaacaaa 180
Query: 181 cttgatgttgtagatgttgatgcatctttctgtaaacttggtcaaagataagtttgactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttgatgttgtagatgttgatgcatctttctgtaaacttggtcaaagataagtttgactt 240
Query: 241 aggaaaaactaaagtgacctctcattcggaacctatggagtacttca 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggaaaaactaaagtgacctctcattcggaacctatggagtacttca 287
>54504_sbi-miR437g:pmrd
Length = 176
Score = 87.7 bits (44), Expect = 4e-18
Identities = 134/162 (82%), Gaps = 9/162 (5%)
Strand = Plus / Plus
Query: 69 agtcaaacttttctaattttgacaa--ttttaga-aaatatattaacatctacaagttca 125
|||||||||||||||| |||||| | ||||||| |||||| || || | ||||||||||
Sbjct: 2 agtcaaacttttctaactttgactaagttttagagaaatatgttcacgtgtacaagttca 61
Query: 126 aataaatgcaataccaactaccaaacatatttcatggaggatttaatgaaacaaacttga 185
|||||||||| || ||| ||||||||||| ||| |||| |||||| | ||||
Sbjct: 62 aataaatgcactatcaag------acatatttcatagagaatttggtgaaactagtttga 115
Query: 186 tgttgtagatgttgatgcatctttctgtaaacttggtcaaag 227
||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 116 tgttgtagatgttgatgcaattttctataaacttggtcaaag 157
>54511_sbi-miR437o:pmrd
Length = 175
Score = 73.8 bits (37), Expect = 7e-14
Identities = 93/112 (83%), Gaps = 6/112 (5%)
Strand = Plus / Minus
Query: 100 aaaatatattaacatctacaagttcaaataaatgcaataccaactaccaaacatatttca 159
|||||||||||||| ||||| ||||| ||||||||| |||||| ||||||||||
Sbjct: 136 aaaatatattaacagctacaggttcacataaatgcactaccaag------acatatttca 83
Query: 160 tggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatctttct 211
| ||| |||||||||||| || ||||||||||||| | || ||||| |||||
Sbjct: 82 tagagaatttaatgaaactaatttgatgttgtagaggatggtgcatttttct 31
>54519_sbi-miR437w:pmrd
Length = 173
Score = 69.9 bits (35), Expect = 1e-12
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 152 atatttcatggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatctttct 211
|||||||| |||| ||||||||| || || ||||||||| | |||||||||||| |||||
Sbjct: 89 atatttcacggagaatttaatgatactaatttgatgttggaaatgttgatgcatttttct 30
Query: 212 gtaaacttggt 222
||||||||||
Sbjct: 29 ataaacttggt 19
>55109_zma-miR437c:pmrd
Length = 177
Score = 61.9 bits (31), Expect = 3e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 100 aaaatatattaacatctacaagttcaaataaatgc 134
||||||||||| |||||||||||||||||||||||
Sbjct: 143 aaaatatattagcatctacaagttcaaataaatgc 109
>54518_sbi-miR437v:pmrd
Length = 114
Score = 61.9 bits (31), Expect = 3e-10
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 157 tcatggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatctttctgtaaa 216
|||||||| |||| ||||||| ||||| |||||||||||||||||| ||||| ||||
Sbjct: 27 tcatggagcatttgatgaaactgctttgatattgtagatgttgatgcatttttctataaa 86
Query: 217 cttggtcaaag 227
||||| |||||
Sbjct: 87 cttggacaaag 97
>54500_sbi-miR437b:pmrd
Length = 171
Score = 60.0 bits (30), Expect = 1e-09
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 150 acatatttcatggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatcttt 209
||||||||||||| ||| |||||||| || |||||||| |||||||| ||||| |||
Sbjct: 78 acatatttcatggtagatgtaatgaaataat-ttgatgtttcagatgttggtgcattttt 136
Query: 210 ctgtaaacttggtcaaag 227
|| |||||||||||||||
Sbjct: 137 ctataaacttggtcaaag 154
>55108_zma-miR437b:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 6e-08
Identities = 71/83 (85%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 148 aaacatatttcatggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatct 207
|||||||||| |||||| || |||| |||| || |||||| ||| |||||||||| | |
Sbjct: 96 aaacatattt-atggagaatctaattaaactaatctgatgtcgtaaatgttgatgcgt-t 39
Query: 208 ttctgtaaacttggtcaaagata 230
|||| ||||||||||||||||||
Sbjct: 38 ttctataaacttggtcaaagata 16
>54515_sbi-miR437s:pmrd
Length = 176
Score = 54.0 bits (27), Expect = 6e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 94 ttttagaaaatatattaacatctacaagttcaaataaat 132
|||||||||||||| | |||| |||||||||||||||||
Sbjct: 145 ttttagaaaatatactgacatttacaagttcaaataaat 107
>54503_sbi-miR437f:pmrd
Length = 174
Score = 54.0 bits (27), Expect = 6e-08
Identities = 103/128 (80%), Gaps = 9/128 (7%)
Strand = Plus / Plus
Query: 100 aaaatatattaacatctacaagttcaaataaatgcaataccaactaccaaacatatttca 159
||||||||||||||||||||| |||||||||||| || || | ||||||||||
Sbjct: 37 aaaatatattaacatctacaataccaaataaatgcactatca------agacatatttca 90
Query: 160 tggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatctttctgtaaactt 219
|| |||||||||||||| || | |||||| ||| ||| |||| ||||| |||||||
Sbjct: 91 tgttggatttaatgaaactaatt---tgttgttgatcttggtgcacttttctataaactt 147
Query: 220 ggtcaaag 227
||||||||
Sbjct: 148 ggtcaaag 155
>54506_sbi-miR437j:pmrd
Length = 172
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 100 aaaatatattaacatctacaagttcaaataaatg 133
|||||| |||||||||||||||| ||||||||||
Sbjct: 136 aaaatacattaacatctacaagtacaaataaatg 103
Score = 44.1 bits (22), Expect = 6e-05
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 150 acatatttcatggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatcttt 209
||||||||| ||||| || |||||||||| | |||| |||| | | ||| ||||| |||
Sbjct: 92 acatatttcttggagaatctaatgaaacatatttgacgttgaaactattggtgcat-ttt 34
Query: 210 ctgtaaacttggtcaaag 227
|| |||||||||||||||
Sbjct: 33 ctataaacttggtcaaag 16
>54507_sbi-miR437k:pmrd
Length = 172
Score = 46.1 bits (23), Expect = 1e-05
Identities = 62/73 (84%), Gaps = 4/73 (5%)
Strand = Plus / Minus
Query: 67 taagtcaaacttttctaattttgacaa---ttttagaaaa-tatattaacatctacaagt 122
|||||||||||| ||||| |||||| | |||||||||| ||| | ||| ||||||| |
Sbjct: 171 taagtcaaacttctctaactttgaccaagtttttagaaaaatatgtcaacttctacaaat 112
Query: 123 tcaaataaatgca 135
|||||||||||||
Sbjct: 111 tcaaataaatgca 99
>54517_sbi-miR437u:pmrd
Length = 164
Score = 44.1 bits (22), Expect = 6e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 158 catggaggatttaatgaaacaaacttgatgttgtagatgttgatgcatctttctgtaaac 217
||||||| |||||||||||| || ||||||| ||||| ||| | || ||||| |||||
Sbjct: 78 catggagaatttaatgaaactaatttgatgtcatagatattggcgtatttttctataaac 137
Query: 218 ttggtcaaag 227
||||| ||||
Sbjct: 138 ttggtgaaag 147
Score = 40.1 bits (20), Expect = 0.001
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 100 aaaatatattaacatctacaagttcaaataaatgca 135
||||||||||||||||| |||| | |||||| ||||
Sbjct: 33 aaaatatattaacatctgcaagctgaaataagtgca 68
>54516_sbi-miR437t:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 6e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 182 ttgatgttgtagatgttgatgcatctttctgtaaacttggtcaaag 227
||||||| | ||||||| ||||| ||||| |||||||||||||||
Sbjct: 108 ttgatgtagcagatgtttgtgcatttttctataaacttggtcaaag 153
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 100 aaaatatattaacatctacaa 120
|||||||||||||||||||||
Sbjct: 31 aaaatatattaacatctacaa 51
>55111_zma-miR437e:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 atgaaacaaacttgatgttgtagat 195
|||||||||| ||||||||||||||
Sbjct: 115 atgaaacaaaattgatgttgtagat 139
>49119_osa-miR1435:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 ttttcttaagtcaaactttt 80
||||||||||||||||||||
Sbjct: 3 ttttcttaagtcaaactttt 22
