miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 396 bits (200), Expect = e-110
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 11 aaggcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctg 60
Query: 71 ccggttcatggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggttcatggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatg 120
Query: 131 ggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagg 180
Query: 191 gagctcctctctgtctgtct 210
||||||||||||||||||||
Sbjct: 181 gagctcctctctgtctgtct 200
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 291 bits (147), Expect = 2e-78
Identities = 174/182 (95%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 21 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70
Query: 81 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 140
||| ||||||||||||||||||| | | ||||||| |||||||||||||||||||||||
Sbjct: 71 gatgcctctctggtgcagcaatgactgatgctcac--ctgcacttgcatgggtgtgcatg 128
Query: 141 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcctct 200
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcctct 188
Query: 201 ct 202
||
Sbjct: 189 ct 190
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 109 bits (55), Expect = 2e-23
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 83 tacctct 89
|||||||
Sbjct: 73 tacctct 79
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 93.7 bits (47), Expect = 1e-18
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 83 tacctct 89
|||||||
Sbjct: 73 tacctct 79
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 93.7 bits (47), Expect = 1e-18
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 20 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 78
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 79 tggatacctct 89
|||||||||||
Sbjct: 70 tggatacctct 80
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 91.7 bits (46), Expect = 4e-18
Identities = 147/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 83 tacctctctggtgcagcaatggccgc--tgct-cacctctgcacttgcatgggtgtgcat 139
||||||| |||| ||||| || |||| | |||||||||||||||| |||||
Sbjct: 73 tacctctggagtgc----atggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
Query: 140 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 197
|||||||||||||| ||| |||| |||| | || || |||||||||||||||||||
Sbjct: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 85.7 bits (43), Expect = 2e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 83 tacctct 89
|||||||
Sbjct: 73 tacctct 79
