miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54933_zma-miR159d:pmrd
Length = 217
Score = 389 bits (196), Expect = e-109
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 1 aagaagatgccgatcgatcgaagagctcccttcgatccaatccaggagggaaagtggtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaagatgccgatcgatcgaagagctcccttcgatccaatccaggagggaaagtggtcg 60
Query: 61 gctgcagctgccggttcatggatacctctctggtgcagcaatggccgagatgctcacctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgcagctgccggttcatggatacctctctggtgcagcaatggccgagatgctcacctg 120
Query: 121 cacttgcatgggtgtgcatgacccgggagacgaaccgaccatcatctttccctcgtgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacttgcatgggtgtgcatgacccgggagacgaaccgaccatcatctttccctcgtgctt 180
Query: 181 ggattgaagggagctc 196
||||||||||||||||
Sbjct: 181 ggattgaagggagctc 196
>54630_sof-miR159c:pmrd
Length = 238
Score = 274 bits (138), Expect = 3e-74
Identities = 171/181 (94%), Gaps = 2/181 (1%)
Strand = Plus / Plus
Query: 16 gatcgaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggt 75
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 39 gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggt 98
Query: 76 tcatggatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgt 135
|||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 99 tcatggatgcctctctggtgcagcaatgactaa--tgctcacctgcacttgcatgggtgt 156
Query: 136 gcatgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagct 195
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagct 216
Query: 196 c 196
|
Sbjct: 217 c 217
>54403_sbi-miR159b:pmrd
Length = 253
Score = 272 bits (137), Expect = 1e-73
Identities = 167/176 (94%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 21 aagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatg 80
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 59 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 118
Query: 81 gatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatg 140
||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 119 gatgcctctctggtgcagcaatgactga--tgctcacctgcacttgcatgggtgtgcatg 176
Query: 141 acccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 177 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
>54932_zma-miR159c:pmrd
Length = 217
Score = 266 bits (134), Expect = 6e-72
Identities = 173/184 (94%), Gaps = 4/184 (2%)
Strand = Plus / Plus
Query: 15 cgatcgaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccgg 74
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 15 cgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccgg 74
Query: 75 ttcatggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatggg 132
|||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 75 ttcatggatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatggg 132
Query: 133 tgtgcatgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaaggga 192
|||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 133 tgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaaggga 192
Query: 193 gctc 196
||||
Sbjct: 193 gctc 196
>54643_sof-miR319b:pmrd
Length = 176
Score = 264 bits (133), Expect = 3e-71
Identities = 166/176 (94%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 21 aagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatg 80
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 81 gatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatg 140
||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 61 gatgcctctctggtgcagcaatgactaa--tgctcacctgcacttgcatgggtgtgcatg 118
Query: 141 acccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 174
>54936_zma-miR159g:pmrd
Length = 180
Score = 256 bits (129), Expect = 6e-69
Identities = 168/179 (93%), Gaps = 4/179 (2%)
Strand = Plus / Plus
Query: 20 gaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcat 79
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 60
Query: 80 ggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatgggtgtgc 137
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 61 ggatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatgggtgtgc 118
Query: 138 atgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 177
>55054_zma-miR319m:pmrd
Length = 178
Score = 254 bits (128), Expect = 2e-68
Identities = 167/178 (93%), Gaps = 4/178 (2%)
Strand = Plus / Plus
Query: 21 aagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatg 80
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 81 gatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatgggtgtgca 138
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct: 61 gatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatgggtgtgca 118
Query: 139 tgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
|||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 176
>54935_zma-miR159f:pmrd
Length = 181
Score = 218 bits (110), Expect = 1e-57
Identities = 165/180 (91%), Gaps = 5/180 (2%)
Strand = Plus / Plus
Query: 20 gaagagctcccttcgatccaatccagg-agggaaagtggtcggctgcagctgccggttca 78
||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttca 60
Query: 79 tggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatgggtgtg 136
||||||| |||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 61 tggatacttctctggtgcagcaatggcc--gcagctcacctctgcacttgcatgggtgtg 118
Query: 137 catgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct: 119 catgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 178
>48824_osa-miR159f:pmrd
Length = 188
Score = 105 bits (53), Expect = 1e-23
Identities = 145/174 (83%), Gaps = 10/174 (5%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
|||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 83 tacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatgac 142
||||||| |||| ||| | || ||| ||||||||||||||| ||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtag--gct----tgcacttgcatgggtttgcatgac 122
Query: 143 ccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
|||||||| ||||| ||||| |||| | || |||||||||||||||||||||
Sbjct: 123 ccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>48821_osa-miR159c:pmrd
Length = 197
Score = 91.7 bits (46), Expect = 2e-19
Identities = 145/177 (81%), Gaps = 7/177 (3%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| | ||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 83 tacctctctggtgcagcaatggccgagatgctca---cctgcacttgcatgggtgtgcat 139
||||||| ||||| |||| | ||||| ||||||||||||||||| |||||
Sbjct: 73 tacctctggagtgca----tggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
Query: 140 gacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
||||||||||| ||||| ||||| |||| | || || ||||||||||||||||||
Sbjct: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctc 185
>48823_osa-miR159e:pmrd
Length = 191
Score = 85.7 bits (43), Expect = 1e-17
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 20 gaagagctccctt-cgatccaatccaggagggaaagtggtcggctgcagctgccggttca 78
||||||||||||| ||||||||| |||||| | ||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 79 tggatacctct 89
|||||||||||
Sbjct: 70 tggatacctct 80
>48822_osa-miR159d:pmrd
Length = 189
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| | ||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 83 tacctct 89
|||||||
Sbjct: 73 tacctct 79
