miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 272 bits (137), Expect = 2e-72
Identities = 167/176 (94%), Gaps = 2/176 (1%)
Strand = Plus / Plus
Query: 21 aagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatg 80
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70
Query: 81 gatacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatg 140
||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 71 gatgcctctctggtgcagcaatgactga--tgctcacctgcacttgcatgggtgtgcatg 128
Query: 141 acccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 129 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 184
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 266 bits (134), Expect = 1e-70
Identities = 173/184 (94%), Gaps = 4/184 (2%)
Strand = Plus / Plus
Query: 15 cgatcgaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccgg 74
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 5 cgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccgg 64
Query: 75 ttcatggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatggg 132
|||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 65 ttcatggatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatggg 122
Query: 133 tgtgcatgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaaggga 192
|||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 123 tgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaaggga 182
Query: 193 gctc 196
||||
Sbjct: 183 gctc 186
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 105 bits (53), Expect = 3e-22
Identities = 145/174 (83%), Gaps = 10/174 (5%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
|||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 83 tacctctctggtgcagcaatggccgagatgctcacctgcacttgcatgggtgtgcatgac 142
||||||| |||| ||| | || ||| ||||||||||||||| ||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtag--gct----tgcacttgcatgggtttgcatgac 122
Query: 143 ccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
|||||||| ||||| ||||| |||| | || |||||||||||||||||||||
Sbjct: 123 ccgggagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 91.7 bits (46), Expect = 4e-18
Identities = 145/177 (81%), Gaps = 7/177 (3%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| | ||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 83 tacctctctggtgcagcaatggccgagatgctca---cctgcacttgcatgggtgtgcat 139
||||||| ||||| |||| | ||||| ||||||||||||||||| |||||
Sbjct: 73 tacctctggagtgca----tggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
Query: 140 gacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaagggagctc 196
||||||||||| ||||| ||||| |||| | || || ||||||||||||||||||
Sbjct: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctc 185
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 85.7 bits (43), Expect = 2e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| | ||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 83 tacctct 89
|||||||
Sbjct: 73 tacctct 79
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 85.7 bits (43), Expect = 2e-16
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 20 gaagagctccctt-cgatccaatccaggagggaaagtggtcggctgcagctgccggttca 78
||||||||||||| ||||||||| |||||| | ||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 79 tggatacctct 89
|||||||||||
Sbjct: 70 tggatacctct 80
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 77.8 bits (39), Expect = 6e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 23 gagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccggttcatgga 82
||||||| ||||||||||| |||||| | ||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 83 tacctct 89
|||||||
Sbjct: 73 tacctct 79
