miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 188 bits (94), Expect = 1e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 gggattgttgtctggctcggtgtctccggtcgagayggccttgccggcgccggagctgtc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 gggattgttgtctggctcggtgtctccggtcgagacggccttgccggcgccggagctgtc 66
Query: 61 gtcgaccggagatctcggaccaggcttcaatccctt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 67 gtcgaccggagatctcggaccaggcttcaatccctt 102
>RF00075;mir-166;ABXC01002961.1/62223-62119 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 96.3 bits (48), Expect = 6e-20
Identities = 85/96 (88%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 1 gggattgttgtctggctcggtgtctccggtcgagayggccttgccggcgccggagctgtc 60
|||||||||||||||||||| |||||||||||||| ||||| | ||||||| ||||
Sbjct: 7 gggattgttgtctggctcggggtctccggtcgagaat-ccttggccttgccggagttgtc 65
Query: 61 gtcgaccggagatctcggaccaggcttcaatccctt 96
|| |||||||||| ||||||||||||||||||||||
Sbjct: 66 gttgaccggagatttcggaccaggcttcaatccctt 101
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 52.4 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 71 gatctcggaccaggcttcaatccctt 96
||||||||||||||||||||||||||
Sbjct: 93 gatctcggaccaggcttcaatccctt 118
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 52.4 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 71 gatctcggaccaggcttcaatccctt 96
||||||||||||||||||||||||||
Sbjct: 78 gatctcggaccaggcttcaatccctt 103
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.4 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 ggagatctcggaccaggcttcaatccc 94
|||||||||||||||||||||| ||||
Sbjct: 87 ggagatctcggaccaggcttcattccc 113
>RF00075;mir-166;AP004125.3/115130-115014 39947:Oryza sativa
Japonica Group
Length = 117
Score = 46.4 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 ctcggaccaggcttcaatccctt 96
|||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctt 113
>RF00075;mir-166;AAAA02007467.1/8861-8977 39946:Oryza sativa Indica
Group
Length = 117
Score = 46.4 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 ctcggaccaggcttcaatccctt 96
|||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctt 113
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.4 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 gagatctcggaccaggcttcaatccc 94
||||||||||||||||||||| ||||
Sbjct: 87 gagatctcggaccaggcttcattccc 112
