miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 240 bits (121), Expect = 4e-63
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 4 ccaagggaacgagtgaagctgccagcatgatctagctcggagtgatcacgcgaggagaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaagggaacgagtgaagctgccagcatgatctagctcggagtgatcacgcgaggagaac 60
Query: 64 aatagctcgaggtggtcatgccttgctagatcatgctgtggcagcctcacttcttcccgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatagctcgaggtggtcatgccttgctagatcatgctgtggcagcctcacttcttcccgt 120
Query: 124 c 124
|
Sbjct: 121 c 121
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 174 bits (88), Expect = 2e-43
Identities = 112/120 (93%)
Strand = Plus / Plus
Query: 5 caagggaacgagtgaagctgccagcatgatctagctcggagtgatcacgcgaggagaaca 64
||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||
Sbjct: 2 caagggaacgagtgaagctgccagcatgatctagctctgagtgatcacccgagaagaaca 61
Query: 65 atagctcgaggtggtcatgccttgctagatcatgctgtggcagcctcacttcttcccgtc 124
|||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 62 atagttcgaggtggtctcgccttgctaggtcatgctgcggcagcctcacttcttcccgtc 121
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 79.8 bits (40), Expect = 8e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 4 ccaagggaacgagtgaagctgccagcatgatctagctcggagtgatca 51
|||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1 ccaagggaacgagtgaagctgccagcatgatctagctctgaatgatca 48
Score = 77.8 bits (39), Expect = 3e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 75 gtggtcatgccttgctagatcatgctgtggcagcctcacttcttccc 121
|||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 103 gtggtcatgccttgctaggtcatgctgcggcagcctcacttcttccc 149
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 5 caagggaacgagtgaagctgccagcatgatcta 37
|||||||||||||||||||||||||||||||||
Sbjct: 2 caagggaacgagtgaagctgccagcatgatcta 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 88 gctagatcatgctgtggcagcctcacttcttccc 121
||||| |||||||| | |||||||||||||||||
Sbjct: 103 gctaggtcatgctgcgacagcctcacttcttccc 136
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 5 caagggaacgagtgaagctgccagcatgatcta 37
||||||||| |||||||||||||||||||||||
Sbjct: 2 caagggaacaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 4 ccaagggaacgagtgaagctgccagcatgatctagct 40
||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ccaagggaataagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 5 caagggaacgagtgaagctgccagcatgatctagct 40
|||||||| ||||||||||||||||||||||||||
Sbjct: 2 caagggaaaaagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 gagtgaagctgccagcatgatctagctc 41
||||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagctc 38
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 gagtgaagctgccagcatgatctagct 40
|||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 agtgaagctgccagcatgatctagct 40
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 ccaagggaacgagtgaagctgccagcatgatcta 37
||||| ||| ||||||||||||||||||||||||
Sbjct: 1 ccaagagaaagagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gtgaagctgccagcatgatctagct 40
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 ggaacgagtgaagctgccagcatgatcta 37
||||| |||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 agtgaagctgccagcatgatctag 38
||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 agtgaagctgccagcatgatcta 37
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgaagctgccagcatgatctag 38
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gtgaagctgccagcatgatcta 37
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 gtgaagctgccagcatgatcta 37
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
