miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 232 bits (117), Expect = 1e-60
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 18 gcctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatcgatgcccg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccgatcgatgcccg 60
Query: 78 tgctgattcttgataatatacaacgcaggaatcgatcgataagcctctgcatccaga 134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctgattcttgataatatacaacgcaggaatcgatcgataagcctctgcatccaga 117
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 77.8 bits (39), Expect = 4e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 20 ctgggcgcagtggtttatcgatctcttccctgccttgtgctgctccg 66
||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 3 ctgggcgcagtggtttatcgatctcttccttgccttgtgctggtccg 49
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 97 acaacgcaggaatcgatcgataagcctctgcatccag 133
||||||| ||||||| ||||||| |||||||||||||
Sbjct: 96 acaacgcgggaatcggtcgataaacctctgcatccag 132
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 73.8 bits (37), Expect = 6e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 20 ctgggcgcagtggtttatcgatctcttccctgccttgtgct 60
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3 ctgggcgcagtggtttatcgatctcttccttgccttgtgct 43
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 97 acaacgcaggaatcgatcgataagcctctgcatccag 133
||||||| ||||||||||||||| |||||||||||||
Sbjct: 95 acaacgcgggaatcgatcgataaacctctgcatccag 131
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 73.8 bits (37), Expect = 6e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 18 gcctgggcgcagtggtttatcgatctcttccctgccttgtg 58
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gcctgggcgcagtggtttatcgatcccttccctgccttgtg 41
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 97 acaacgcaggaatcgatcgataagcctctgcatccag 133
||||||| ||||||||||||||| |||||||||||||
Sbjct: 121 acaacgcgggaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 73.8 bits (37), Expect = 6e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 18 gcctgggcgcagtggtttatcgatctcttccctgccttgtg 58
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gcctgggcgcagtggtttatcgatcccttccctgccttgtg 41
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 97 acaacgcaggaatcgatcgataagcctctgcatccag 133
||||||| ||||||||||||||| |||||||||||||
Sbjct: 122 acaacgcgggaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 99 aacgcaggaatcgatcgataagcctctgcatccag 133
|||||| |||||||||||||| |||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 106 gaatcgatcgataagcctctgcatccag 133
|||||||||||||| |||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 106 gaatcgatcgataagcctctgcatccag 133
|||||||||||||| |||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatccag 90
