miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55068_zma-miR395c:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 agttccttccaaacacttcaccagctaggccat 33
|||||| | ||||||||||||||||||||||||
Sbjct: 22 agttccctgcaaacacttcaccagctaggccat 54
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactct 81
||||||||||||||||||||||
Sbjct: 99 gtgaagtgtttggaggaactct 120
>55070_zma-miR395e:pmrd
Length = 257
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactct 81
||||||||||||||||||||||
Sbjct: 1 gtgaagtgtttggaggaactct 22
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactct 81
||||||||||||||||||||||
Sbjct: 165 gtgaagtgtttggaggaactct 186
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 agttccttccaaacacttcac 21
|||||||||||||||||||||
Sbjct: 237 agttccttccaaacacttcac 257
>55066_zma-miR395a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 gctagtgaagtgtttggaggaactct 81
||||||||||||||||| ||||||||
Sbjct: 106 gctagtgaagtgtttgggggaactct 131
>48924_osa-miR395c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactct 81
||||||||||||||||||||||
Sbjct: 59 gtgaagtgtttggaggaactct 80
>54483_sbi-miR395k:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactc 80
|||||||||||||||||||||
Sbjct: 60 gtgaagtgtttggaggaactc 80
>54481_sbi-miR395i:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 gctagtgaagtgtttggaggaactc 80
||||||||||||||||| |||||||
Sbjct: 73 gctagtgaagtgtttgggggaactc 97
>55069_zma-miR395d:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaact 79
||||||||||||||||||||
Sbjct: 62 gtgaagtgtttggaggaact 81
>54473_sbi-miR395a:pmrd
Length = 150
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 tagtgaagtgtttggaggaactct 81
||||||||||||||| ||||||||
Sbjct: 109 tagtgaagtgtttgggggaactct 132
>48936_osa-miR395o:pmrd
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tgaagtgtttggaggaactc 80
||||||||||||||||||||
Sbjct: 50 tgaagtgtttggaggaactc 69
>48929_osa-miR395h:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 tagtgaagtgtttggaggaactct 81
||||||||||||||| ||||||||
Sbjct: 80 tagtgaagtgtttgggggaactct 103
>48934_osa-miR395m:pmrd
Length = 120
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 58 tagtgaagtgtttggaggaactc 80
||||||||||||||| |||||||
Sbjct: 98 tagtgaagtgtttgggggaactc 120
