miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004559.1/91212-91315 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 67.9 bits (34), Expect = 2e-11
Identities = 72/84 (85%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 1 agttccttccaaacacttcaccagctaggccatgcacaagatgaacccacatta---ggc 57
||||||| |||||||||||| |||||||||||||||||| || ||| || ||| |||
Sbjct: 12 agttcctcccaaacacttcatcagctaggccatgcacaatgtggacctactttaggcggc 71
Query: 58 tagtgaagtgtttggaggaactct 81
||||||||||||||| |||||||
Sbjct: 72 tagtgaagtgtttgggtgaactct 95
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 gctagtgaagtgtttggaggaactct 81
||||||||||||||||| ||||||||
Sbjct: 85 gctagtgaagtgtttgggggaactct 110
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactct 81
||||||||||||||||||||||
Sbjct: 72 gtgaagtgtttggaggaactct 93
>RF00451;mir-395;AF402959.1/7545-7457 4530:Oryza sativa (rice)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 gtgaagtgtttggaggaactct 81
||||||||||||||||||||||
Sbjct: 59 gtgaagtgtttggaggaactct 80
