miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55085_zma-miR396n:pmrd
Length = 186
Score = 129 bits (65), Expect = 3e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 10 tttccacaggctttcttgaactgtgaactcgtgggtggtggtggtatgtcggatggaatg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtgggtggtggtggtatgtcggatggaatg 60
Query: 70 cttgg 74
|||||
Sbjct: 61 cttgg 65
>55076_zma-miR396e:pmrd
Length = 186
Score = 123 bits (62), Expect = 2e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 10 tttccacaggctttcttgaactgtgaactcgtgggtggtggtggtatgtcggatggaatg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtgggtggtggtggtatgtcggatggaatg 60
Query: 70 ct 71
||
Sbjct: 61 ct 62
>55075_zma-miR396d:pmrd
Length = 186
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 10 tttccacaggctttcttgaactgtgaactcgtgggtggtggtggtatgtcggatggaatg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtgggtggtggtggtatgtcggatgaaatg 60
Query: 70 cttgg 74
|||||
Sbjct: 61 cttgg 65
>48951_osa-miR396e:pmrd
Length = 184
Score = 87.7 bits (44), Expect = 1e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 1 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 45
>48950_osa-miR396e:pmrd
Length = 184
Score = 87.7 bits (44), Expect = 1e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 1 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 45
>48949_osa-miR396e:pmrd
Length = 184
Score = 87.7 bits (44), Expect = 1e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 1 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 45
>48948_osa-miR396d:pmrd
Length = 142
Score = 87.7 bits (44), Expect = 1e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 1 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cgggcatgctttccacaggctttcttgaactgtgaactcgtggg 53
>55084_zma-miR396m:pmrd
Length = 227
Score = 71.9 bits (36), Expect = 6e-14
Identities = 45/47 (95%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 10 tttccacaggctttcttgaactgtgaactcgtgg--gtggtggtggt 54
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtgggcgtggtggtggt 47
>54488_sbi-miR396e:pmrd
Length = 189
Score = 69.9 bits (35), Expect = 2e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 10 tttccacaggctttcttgaactgtgaactcgtggg 44
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 atgtcggatggaatgcttgg 74
||||||||||||||||||||
Sbjct: 64 atgtcggatggaatgcttgg 83
>48954_osa-miR396f:pmrd
Length = 176
Score = 67.9 bits (34), Expect = 9e-13
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 catgctttccacaggctttcttgaactgtgaactcgtg 42
|||||| |||||||||||||||||||||||||||||||
Sbjct: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
>48953_osa-miR396f:pmrd
Length = 176
Score = 67.9 bits (34), Expect = 9e-13
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 catgctttccacaggctttcttgaactgtgaactcgtg 42
|||||| |||||||||||||||||||||||||||||||
Sbjct: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
>48952_osa-miR396f:pmrd
Length = 176
Score = 67.9 bits (34), Expect = 9e-13
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 catgctttccacaggctttcttgaactgtgaactcgtg 42
|||||| |||||||||||||||||||||||||||||||
Sbjct: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
>48797_oru-miR396:pmrd
Length = 178
Score = 67.9 bits (34), Expect = 9e-13
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 catgctttccacaggctttcttgaactgtgaactcgtg 42
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctctccacaggctttcttgaactgtgaactcgtg 41
>48480_far-miR396:pmrd
Length = 99
Score = 63.9 bits (32), Expect = 1e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 5 catgctttccacaggctttcttgaactgtgaactcg 40
|||||| |||||||||||||||||||||||||||||
Sbjct: 11 catgctctccacaggctttcttgaactgtgaactcg 46
>48651_hvu-miR396:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 5 catgctttccacaggctttcttgaactgtgaactcg 40
|||||| |||||||||||||||||||||| ||||||
Sbjct: 6 catgctctccacaggctttcttgaactgtcaactcg 41
>48956_osa-miR396h:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tttccacaggctttcttgaac 30
|||||||||||||||||||||
Sbjct: 109 tttccacaggctttcttgaac 129
>48955_osa-miR396g:pmrd
Length = 181
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tttccacaggctttcttgaac 30
|||||||||||||||||||||
Sbjct: 149 tttccacaggctttcttgaac 169
>48957_osa-miR396i:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacaggctttcttgaac 30
||||||||||||||||||||
Sbjct: 90 ttccacaggctttcttgaac 109
>48506_ghr-miR396a:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacaggctttcttgaac 30
||||||||||||||||||||
Sbjct: 66 ttccacaggctttcttgaac 85
