miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 87.7 bits (44), Expect = 2e-17
Identities = 53/55 (96%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 2 gggcatgctttccacaggctttcttgaactgtgaactcgtgg--gtggtggtggt 54
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactcgtgggcgtggtggtggt 55
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 85.7 bits (43), Expect = 7e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 2 gggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactcgtggg 43
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 85.7 bits (43), Expect = 7e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 2 gggcatgctttccacaggctttcttgaactgtgaactcgtggg 44
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactcgtggg 43
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 catgctttccacaggctttcttgaactgtgaactcgtg 42
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctctccacaggctttcttgaactgtgaactcgtg 41
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 tccacaggctttcttgaactgtgaactcg 40
|||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 3 ggcatgctttccacaggctttcttgaactgtgaact 38
|||||| | |||||||||||||||||||||||||||
Sbjct: 2 ggcatgttctccacaggctttcttgaactgtgaact 37
