miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>55078_zma-miR396g:pmrd
          Length = 117

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 86  cgaagacgaaggtcaagaaagctgtgggaag 116
           |||||||||||||||||||||||||||||||
Sbjct: 87  cgaagacgaaggtcaagaaagctgtgggaag 117





>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 93  gaaggtcaagaaagctgtgggaaga 117
           |||||||||||||||||||||||||
Sbjct: 122 gaaggtcaagaaagctgtgggaaga 146





>48947_osa-miR396c:pmrd
          Length = 141

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 96  ggtcaagaaagctgtgggaaga 117
           ||||||||||||||||||||||
Sbjct: 113 ggtcaagaaagctgtgggaaga 134





>54584_smo-miR396:pmrd
          Length = 168

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  acgaaggtcaagaaagctgtgggaa 115
           |||||| ||||||||||||||||||
Sbjct: 132 acgaagttcaagaaagctgtgggaa 156





>55077_zma-miR396f:pmrd
          Length = 166

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 93  gaaggtcaagaaagctgtgggaag 116
           ||||||||||||||| ||||||||
Sbjct: 143 gaaggtcaagaaagccgtgggaag 166