miRNEST 2.0, an integrative microRNA resource :: BLAST
>55104_zma-miR408:pmrd
Length = 191
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
|||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gttgttgctccctcccctgcactgcctcttccctggctc 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 36/40 (90%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1 gacagggacgaggcagagcatgggtagggggccatcaaca 40
|||||||| ||| ||||||||||| | |||||||||||||
Sbjct: 21 gacagggatgagacagagcatggg-atggggccatcaaca 59
>48975_osa-miR408:pmrd
Length = 213
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
|||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gttgttgctccctcccctgcactgcctcttccctggctc 175
Score = 44.1 bits (22), Expect = 3e-05
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 gacagggacgaggcagagcatgggtagggggccatcaacaga 42
|||||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 29 gacagggatgaggcagagcatggg-atggggctatcaacaga 69
>54648_sof-miR408c:pmrd
Length = 286
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
||||||||| |||||||||||||||||||||||||||||
Sbjct: 231 gttgttgcttcctcccctgcactgcctcttccctggctc 269
Score = 50.1 bits (25), Expect = 5e-07
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
|||||||| ||||||||||||||| | ||||||||||||| ||||
Sbjct: 21 gacagggatgaggcagagcatggg-atggggccatcaacaaaatt 64
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 atttctgtttgctcgctcacaaaatggaggga 86
||||||||||||| |||||||||| |||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacggaggga 129
>54647_sof-miR408b:pmrd
Length = 286
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
||||||||| |||||||||||||||||||||||||||||
Sbjct: 231 gttgttgcttcctcccctgcactgcctcttccctggctc 269
Score = 50.1 bits (25), Expect = 5e-07
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
|||||||| ||||||||||||||| | ||||||||||||| ||||
Sbjct: 21 gacagggatgaggcagagcatggg-atggggccatcaacaaaatt 64
>54646_sof-miR408a:pmrd
Length = 283
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
||||||||| |||||||||||||||||||||||||||||
Sbjct: 228 gttgttgcttcctcccctgcactgcctcttccctggctc 266
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 55 atttctgtttgctcgctcacaaaatggaggga 86
||||||||||||| |||||||||| |||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacggaggga 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
|||||||| ||||||||||||||| | | ||||||||||| ||||
Sbjct: 21 gacagggatgaggcagagcatggg-atgaggccatcaacaaaatt 64
>54499_sbi-miR408:pmrd
Length = 205
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggct 146
||||||||| ||||||||||||||||||||||||||||
Sbjct: 168 gttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 54.0 bits (27), Expect = 3e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 2 acagggacgaggcagagcatgggtagggggccatcaaca 40
||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 acagggacgaggcagagcatggg-atggggccatcaaca 38
>54690_tae-miR408:pmrd
Length = 187
Score = 61.9 bits (31), Expect = 1e-10
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 gttgttgctccctccc-tgcactgcctcttccctggctc 158
>54649_sof-miR408d:pmrd
Length = 215
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
||||||||| || ||||||||||||||||||||||||||
Sbjct: 160 gttgttgcttccacccctgcactgcctcttccctggctc 198
Score = 58.0 bits (29), Expect = 2e-09
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
|||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 21 gacagggacgaggcagagcatggg-atggggccatcaacaaaatt 64
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 122 cccctgcactgcctcttccctggct 146
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 119 cctcccctgcactgcctcttccctggctc 147
|||||| ||||||||||||||||||||||
Sbjct: 64 cctcccatgcactgcctcttccctggctc 92
>54650_sof-miR408e:pmrd
Length = 283
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
||||||||| || |||||||||| ||||||||||||||
Sbjct: 228 gttgttgcttacttccctgcactgactcttccctggctc 266
Score = 42.1 bits (21), Expect = 1e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
|||||||| ||||||||||||||| | | ||||||||||| ||||
Sbjct: 21 gacagggatgaggcagagcatggg-atgaggccatcaacaaaatt 64
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 126 tgcactgcctcttccctggctc 147
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 126 tgcactgcctcttccctggctc 147
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 126 tgcactgcctcttccctggctc 147
||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 126 tgcactgcctcttccctggctc 147
||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctc 142
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 tgcactgcctcttccctggct 146
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 tgcactgcctcttccctggct 146
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 tgcactgcctcttccctggct 146
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 tgcactgcctcttccctggct 146
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 126 tgcactgcctcttccctggct 146
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
