miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;ABXC01004285.1/25916-25740 4558:Sorghum bicolor
(sorghum)
Length = 177
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1 cctaagggcagtagggatgagaacatgaaggaacgcgagtgctctgaatt 50
||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct: 26 cctaagggcagtaggaatgagaacacgaaggaacgcgagtgctctaaatt 75
>RF01911;MIR2118;ABXC01004283.1/14206-14032 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 79 tgtcgtgttcctgatgcctctcattcctatggttcttagg 118
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 112 tgtcgtgttcctgatgcctcccattcctatggttcttagg 151
>RF01911;MIR2118;AL606706.3/95698-95530 39947:Oryza sativa Japonica
Group
Length = 169
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 86 ttcctgatgcctctcattcctatggttct 114
|||||||||||||||||||||||||||||
Sbjct: 113 ttcctgatgcctctcattcctatggttct 141
>RF01911;MIR2118;ABXC01004282.1/24832-24688 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 ttcctgatgcctctcattcctatggttcttagg 118
|||||| ||||||||||||||| ||||||||||
Sbjct: 89 ttcctgttgcctctcattcctacggttcttagg 121
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 ttcctgatgcctctcattcctatggttcttagg 118
||||||||||||| ||||||||| |||||||||
Sbjct: 108 ttcctgatgcctcccattcctatagttcttagg 140
>RF01911;MIR2118;ABXC01004285.1/25657-25493 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 ttcctgatgcctctcattcctat 108
|||||||||||||||||||||||
Sbjct: 109 ttcctgatgcctctcattcctat 131
>RF01911;MIR2118;ABXC01004283.1/13954-13790 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 86 ttcctgatgcctctcattcctatggttctt 115
|||| |||||||||||||||||| ||||||
Sbjct: 109 ttcccgatgcctctcattcctatagttctt 138
>RF01911;MIR2118;AACV01009812.1/23383-23542 39947:Oryza sativa
Japonica Group
Length = 160
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 86 ttcctgatgcctctcattcctatggttctt 115
||||||||||||| ||||||||| ||||||
Sbjct: 104 ttcctgatgcctcccattcctattgttctt 133
