miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>55119_zma-miR2118c:pmrd
          Length = 133

 Score =  264 bits (133), Expect = 1e-71
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaaggcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaaggcctat 60

                                                                       
Query: 61  gaggttgaaacctcattttgtgtcttcctaatgcctcccattcctatcgttcttaggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaggttgaaacctcattttgtgtcttcctaatgcctcccattcctatcgttcttaggtga 120

                        
Query: 121 tccttcctcttgc 133
           |||||||||||||
Sbjct: 121 tccttcctcttgc 133




>55120_zma-miR2118d:pmrd
          Length = 148

 Score =  145 bits (73), Expect = 9e-36
 Identities = 104/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                       
Query: 21  tctaagagcagtgggcatgggaacatggaggaaggcctatgaggttgaaacctcattttg 80
           ||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||
Sbjct: 26  tctaagagcagtgggcatgggaacacggaggaaggcctatgag-tggaaagctcattttg 84

                                                                
Query: 81  tgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcctcttgc 133
            |||||||| ||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 85  ggtcttcctgatgcctcccatgcctatcgttgttaggtgctccttcctcttgc 137




>55121_zma-miR2118e:pmrd
          Length = 143

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 85  ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
           ||||| ||| ||||||||||||  ||||||||||| |||||||||||
Sbjct: 90  ttcctgatgtctcccattcctacggttcttaggtgctccttcctctt 136



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 21 tctaagagcagtgggcatgggaacatggaggaa 53
          ||||||||||||||| |||| |||||| |||||
Sbjct: 26 tctaagagcagtgggaatggaaacatgaaggaa 58




>55118_zma-miR2118b:pmrd
          Length = 118

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 23 taagagcagtgggcatgggaacatggaggaa 53
          ||||||||||||| |||||||||||||||||
Sbjct: 1  taagagcagtgggaatgggaacatggaggaa 31



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  atgcctcccattcctatcgttctta 115
           ||||||||||||||||| |||||||
Sbjct: 94  atgcctcccattcctattgttctta 118




>49164_osa-miR1869:pmrd
          Length = 138

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 22  ctaagagcagtgggcatgggaacatggaggaaggcct 58
           ||||||||| | |||||||||||||||||||| ||||
Sbjct: 127 ctaagagcattaggcatgggaacatggaggaaagcct 91




>55122_zma-miR2118f:pmrd
          Length = 120

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 taagagcagtgggcatgggaacat 46
          ||||||||||||||||||||||||
Sbjct: 1  taagagcagtgggcatgggaacat 24