miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55119_zma-miR2118c:pmrd
Length = 133
Score = 264 bits (133), Expect = 1e-71
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaaggcctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaggaagtaaagatgatctaagagcagtgggcatgggaacatggaggaaggcctat 60
Query: 61 gaggttgaaacctcattttgtgtcttcctaatgcctcccattcctatcgttcttaggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggttgaaacctcattttgtgtcttcctaatgcctcccattcctatcgttcttaggtga 120
Query: 121 tccttcctcttgc 133
|||||||||||||
Sbjct: 121 tccttcctcttgc 133
>55120_zma-miR2118d:pmrd
Length = 148
Score = 145 bits (73), Expect = 9e-36
Identities = 104/113 (92%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 21 tctaagagcagtgggcatgggaacatggaggaaggcctatgaggttgaaacctcattttg 80
||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||
Sbjct: 26 tctaagagcagtgggcatgggaacacggaggaaggcctatgag-tggaaagctcattttg 84
Query: 81 tgtcttcctaatgcctcccattcctatcgttcttaggtgatccttcctcttgc 133
|||||||| ||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 85 ggtcttcctgatgcctcccatgcctatcgttgttaggtgctccttcctcttgc 137
>55121_zma-miR2118e:pmrd
Length = 143
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 85 ttcctaatgcctcccattcctatcgttcttaggtgatccttcctctt 131
||||| ||| |||||||||||| ||||||||||| |||||||||||
Sbjct: 90 ttcctgatgtctcccattcctacggttcttaggtgctccttcctctt 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 21 tctaagagcagtgggcatgggaacatggaggaa 53
||||||||||||||| |||| |||||| |||||
Sbjct: 26 tctaagagcagtgggaatggaaacatgaaggaa 58
>55118_zma-miR2118b:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 23 taagagcagtgggcatgggaacatggaggaa 53
||||||||||||| |||||||||||||||||
Sbjct: 1 taagagcagtgggaatgggaacatggaggaa 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 91 atgcctcccattcctatcgttctta 115
||||||||||||||||| |||||||
Sbjct: 94 atgcctcccattcctattgttctta 118
>49164_osa-miR1869:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 22 ctaagagcagtgggcatgggaacatggaggaaggcct 58
||||||||| | |||||||||||||||||||| ||||
Sbjct: 127 ctaagagcattaggcatgggaacatggaggaaagcct 91
>55122_zma-miR2118f:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 23 taagagcagtgggcatgggaacat 46
||||||||||||||||||||||||
Sbjct: 1 taagagcagtgggcatgggaacat 24
