miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 103 bits (52), Expect = 5e-22
Identities = 104/121 (85%), Gaps = 9/121 (7%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacataggggaaagccaaac-tttctttacctgtacaacta 59
|||||||||||||||||||||||| | |||||||||||| ||||||||||| |||| |||
Sbjct: 27 taagagcagtgggcatgggaacatggaggaaagccaaacttttctttacctctacagcta 86
Query: 60 agggtggagaactggagattagtttagtgtttcccaatgccttccatgcctattgttctt 119
||| || |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 87 gggg--------tgaagattagtttagtgtttcccgatgcctcccatgcctattgttctt 138
Query: 120 a 120
|
Sbjct: 139 a 139
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 89 tttcccaatgccttccatgcctattgttctta 120
||||||||||||| ||||||||||||||||||
Sbjct: 101 tttcccaatgcctcccatgcctattgttctta 132
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 86 gtgtttcccaatgccttccatgcctattgttctta 120
|||||||||||||||| |||| |||||||||||||
Sbjct: 111 gtgtttcccaatgcctcccattcctattgttctta 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacataggggaaagcc 35
||||||||||||| |||||||||| | ||||||||
Sbjct: 28 taagagcagtgggaatgggaacatggaggaaagcc 62
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacataggggaaagc 34
|||||||||||||||||||||||| | |||||||
Sbjct: 27 taagagcagtgggcatgggaacatggaggaaagc 60
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacataggggaaagcca 36
||||||||||||| |||||||||| | |||||||||
Sbjct: 28 taagagcagtgggaatgggaacatggaggaaagcca 63
>RF01911;MIR2118;ABXC01004282.1/22775-22606 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 89 tttcccaatgccttccatgcctattgtt 116
||||||||||||| ||||||||||||||
Sbjct: 113 tttcccaatgcctcccatgcctattgtt 140
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacat 24
||||||||||||||||||||||||
Sbjct: 27 taagagcagtgggcatgggaacat 50
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa
Japonica Group
Length = 168
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacat 24
||||||||||||||||||||||||
Sbjct: 27 taagagcagtgggcatgggaacat 50
>RF01911;MIR2118;AL606706.3/88345-88174 39947:Oryza sativa
Japonica Group
Length = 172
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacataggggaaa 32
||||||||||||| |||||||||||| |||||
Sbjct: 28 taagagcagtgggaatgggaacatagaggaaa 59
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa
Indica Group
Length = 172
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacataggggaaagcc 35
||||||||||||| |||||||||| | ||||||||
Sbjct: 28 taagagcagtgggaatgggaacatggaggaaagcc 62
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 taagagcagtgggcatgggaacataggggaaagc 34
||||||||||||| |||||||||| | |||||||
Sbjct: 28 taagagcagtgggaatgggaacatggaggaaagc 61
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa Japonica
Group
Length = 170
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 89 tttcccaatgccttccatgcctattgttct 118
||||||||| ||| ||||||||||||||||
Sbjct: 112 tttcccaatacctcccatgcctattgttct 141
