miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat_field-containing protein
At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 46.6 bits (109), Expect = 5e-05
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = +1
Query: 1 GDIANGVQLFDEMPERNVVSWTALIAGF 84
G++ N ++F+EMPERNVVSWTA+I+GF
Sbjct: 169 GEVENAYKVFEEMPERNVVSWTAMISGF 196
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat_field-containing protein
At1g32415, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E56 PE=2 SV=1
Length = 761
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1
Query: 1 GDIANGVQLFDEMPERNVVSWTALIAGF 84
GD+ +LF EMPERN+VSWTA+I+GF
Sbjct: 245 GDVREAYRLFCEMPERNIVSWTAMISGF 272
>sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat_field-containing protein
At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1
Length = 745
Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1
Query: 1 GDIANGVQLFDEMPERNVVSWTALIAGFV 87
G+I Q+FD MPERNVVSWTALI G+V
Sbjct: 110 GNILYARQVFDTMPERNVVSWTALITGYV 138
>sp|Q9M9R6|PPR43_ARATH Pentatricopeptide repeat_field-containing protein
At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2
Length = 540
Score = 43.5 bits (101), Expect = 4e-04
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 1 GDIANGVQLFDEMPERNVVSWTALIAGF 84
GD+++ QLFD MP+RNVVSW +LIAG+
Sbjct: 345 GDMSSARQLFDTMPKRNVVSWNSLIAGY 372
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat_field-containing protein
At5g46460, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H49 PE=2 SV=1
Length = 697
Score = 43.5 bits (101), Expect = 4e-04
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 1 GDIANGVQLFDEMPERNVVSWTALIAG 81
GD+ V+LFDEMPER+VVSWTA++ G
Sbjct: 111 GDMNTAVKLFDEMPERSVVSWTAMVNG 137
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat_field-containing protein
At1g05750, chloroplastic OS=Arabidopsis thaliana
GN=PDE247 PE=2 SV=1
Length = 500
Score = 43.1 bits (100), Expect = 5e-04
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +1
Query: 1 GDIANGVQLFDEMPERNVVSWTALIAGFV 87
G + N ++FD+MPER+++SWTA+I GFV
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFV 182
