miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>46381_miR1884:micropc
          Length = 204

 Score = 77.8 bits (39), Expect = 4e-15
 Identities = 115/135 (85%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                       
Query: 66  attcgtcttattcaaaaacattacataattataatttattttattatgagttgttttatc 125
           |||| ||||||| ||||| ||||  ||||||| |||||||||||||||| ||| ||||||
Sbjct: 40  attcatcttattaaaaaa-attatgtaattatcatttattttattatgatttgatttatc 98

                                                                       
Query: 126 actcata-gtactttaagtgtgatttatat-tttataaatttgcataaaatttttgaata 183
           | ||| | || |||||||| |||| || || ||| || |||||||| ||| |||||||||
Sbjct: 99  a-tcaaatgttctttaagtatgatataaatatttttatatttgcatcaaaattttgaata 157

                          
Query: 184 agacgaatggtcaaa 198
           |||||||||||||||
Sbjct: 158 agacgaatggtcaaa 172



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 59  tttgacaattcgtcttattcaaaa 82
           |||||| |||||||||||||||||
Sbjct: 172 tttgaccattcgtcttattcaaaa 149




>46603_miR806:micropc
          Length = 188

 Score = 54.0 bits (27), Expect = 5e-08
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 169 taaaatttttgaataagacgaatggtcaaacatgt 203
           |||| ||||||||||||||||| ||||||||||||
Sbjct: 54  taaattttttgaataagacgaacggtcaaacatgt 20



 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 54 acatgtttgacaattcgtcttattcaaaaa 83
          |||||||||||  |||||||||||||||||
Sbjct: 20 acatgtttgaccgttcgtcttattcaaaaa 49



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 174 tttttgaataagacgaatggtcaaacatgtaagaaaaagtcaacggtg 221
           ||||||||||||| ||| ||| ||| ||||   |||||||||||||||
Sbjct: 141 tttttgaataagatgaacggttaaatatgtgctaaaaagtcaacggtg 188




>46529_miR806:micropc
          Length = 188

 Score = 54.0 bits (27), Expect = 5e-08
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 169 taaaatttttgaataagacgaatggtcaaacatgt 203
           |||| ||||||||||||||||| ||||||||||||
Sbjct: 54  taaattttttgaataagacgaacggtcaaacatgt 20



 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 54 acatgtttgacaattcgtcttattcaaaaa 83
          |||||||||||  |||||||||||||||||
Sbjct: 20 acatgtttgaccgttcgtcttattcaaaaa 49



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 174 tttttgaataagacgaatggtcaaacatgtaagaaaaagtcaacggtg 221
           ||||||||||||| ||| ||| ||| ||||   |||||||||||||||
Sbjct: 141 tttttgaataagatgaacggttaaatatgtgctaaaaagtcaacggtg 188




>45954_miR806:micropc
          Length = 188

 Score = 54.0 bits (27), Expect = 5e-08
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 169 taaaatttttgaataagacgaatggtcaaacatgt 203
           |||| ||||||||||||||||| ||||||||||||
Sbjct: 54  taaattttttgaataagacgaacggtcaaacatgt 20



 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 54 acatgtttgacaattcgtcttattcaaaaa 83
          |||||||||||  |||||||||||||||||
Sbjct: 20 acatgtttgaccgttcgtcttattcaaaaa 49



 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 174 tttttgaataagacgaatggtcaaacatgtaagaaaaagtcaacggtg 221
           ||||||||||||| ||| ||| ||| ||||   |||||||||||||||
Sbjct: 141 tttttgaataagatgaacggttaaatatgtgctaaaaagtcaacggtg 188




>46748_miR806:micropc
          Length = 187

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                
Query: 169 taaaatttttgaataagacgaatggtcaaacatgtaagaaaaagtcaacggtg 221
           |||| ||||||||||||||||  ||||||||||||   |||||||||| ||||
Sbjct: 135 taaattttttgaataagacgagcggtcaaacatgtgctaaaaagtcaatggtg 187



 Score = 46.1 bits (23), Expect = 1e-05
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 41  ttgattttttcgtacatgtttgacaattcgtcttattcaaaaacattacataattataat 100
           |||| ||||| | |||||||||||   ||||||||||||||||  ||| |||||||| ||
Sbjct: 182 ttgactttttagcacatgtttgaccgctcgtcttattcaaaaaatttaaataattattat 123

                  
Query: 101 ttatttt 107
           || ||||
Sbjct: 122 ttttttt 116



 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 174 tttttgaataagacgaatggtcaaacatgt 203
           ||||||||||||| ||| ||||||||||||
Sbjct: 48  tttttgaataagatgaacggtcaaacatgt 19