miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41875_far-MIR396:mirbase
Length = 170
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgcgcgcgtgcgccgccggcctgctacttctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcgcgcgcgtgcgccgccggcctgctacttctcg 72
Query: 61 cttcgatcttgtctgcctagcttgttcatggttcaagaaagtccttgga 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cttcgatcttgtctgcctagcttgttcatggttcaagaaagtccttgga 121
>42585_sbi-MIR396d:mirbase
Length = 96
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgcgcgcgtgc 38
||||||||||||||||||||||||||||| |||||||
Sbjct: 2 tccacaggctttcttgaactgtgaactcgatcgcgtgc 39
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 83 tgttcatggttcaagaaagtccttgga 109
|||| ||||||||||||||||||||||
Sbjct: 69 tgttgatggttcaagaaagtccttgga 95
>41791_bdi-MIR396a:mirbase
Length = 209
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcgcgcgc 34
||||||||||||||||||||||||||||| ||||
Sbjct: 33 tccacaggctttcttgaactgtgaactcgtgcgc 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 81 cttgttcatggttcaagaaagtccttgga 109
|||||| ||||||||||||||||||||||
Sbjct: 146 cttgttgatggttcaagaaagtccttgga 174
>42810_zma-MIR396d:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 12 tccacaggctttcttgaactgtgaactcg 40
>42809_zma-MIR396c:mirbase
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 12 tccacaggctttcttgaactgtgaactcg 40
>42586_sbi-MIR396e:mirbase
Length = 189
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcg 31
>42033_osa-MIR396f:mirbase
Length = 176
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcg 38
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 81 cttgttcatggttcaagaaagtccttgga 109
|||||| || |||||||||||||||||||
Sbjct: 138 cttgttgatagttcaagaaagtccttgga 166
>42032_osa-MIR396f:mirbase
Length = 176
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcg 38
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 81 cttgttcatggttcaagaaagtccttgga 109
|||||| || |||||||||||||||||||
Sbjct: 138 cttgttgatagttcaagaaagtccttgga 166
>42031_osa-MIR396e:mirbase
Length = 184
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcg 41
>42030_osa-MIR396e:mirbase
Length = 184
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcg 41
>42029_osa-MIR396d:mirbase
Length = 142
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 21 tccacaggctttcttgaactgtgaactcg 49
>41796_bdi-MIR396f:mirbase
Length = 161
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 20 tccacaggctttcttgaactgtgaactcg 48
>41792_bdi-MIR396b:mirbase
Length = 189
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 tccacaggctttcttgaactgtgaactcg 29
|||||||||||||||||||||||||||||
Sbjct: 32 tccacaggctttcttgaactgtgaactcg 60
