miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatcttataactccctacttcgtttagggaagatcagatcatctg 60
||||||||||||||||||| || | || ||| | ||||| ||| |||||||||||| ||
Sbjct: 14 tgaagctgccagcatgatc-taaatcttcctccctcgttgaggagagatcagatcatgtg 72
Query: 61 gcagtttca 69
|||||||||
Sbjct: 73 gcagtttca 81
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gatcagatcatctggcagtttca 69
|||||||||||||||||||||||
Sbjct: 79 gatcagatcatctggcagtttca 101
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctta 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctta 35
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 gaagatcagatcatctggcagtttca 69
|||||||||||||| |||||||||||
Sbjct: 59 gaagatcagatcatatggcagtttca 84
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctta 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctta 35
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctta 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctta 35
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 aagatcagatcatctggcagtttca 69
||||||||||||| |||||||||||
Sbjct: 56 aagatcagatcatgtggcagtttca 80
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 atcagatcatctggcagtttca 69
||||||||||||||||||||||
Sbjct: 85 atcagatcatctggcagtttca 106
