miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcagatcttcc 29
||||||||||||||||| |||||||||||
Sbjct: 11 gatattggcctggttcactcagatcttcc 39
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 50 tctcttagatatctgattgagccgcgtcaatatct 84
||||| || ||||||||||||||||| ||||||||
Sbjct: 64 tctctcagttatctgattgagccgcgccaatatct 98
>RF00643;MIR171_1;ABIM01016024.1/6261-6158 3649:Carica papaya
(papaya)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tctgattgagccgcgtcaatatct 84
||||||||||||||||||||||||
Sbjct: 70 tctgattgagccgcgtcaatatct 93
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcagatctt 27
||||||||||||||||| |||||||||
Sbjct: 11 gatattggcctggttcactcagatctt 37
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tatctgattgagccgcgtcaatatct 84
||||||||||||||||| ||||||||
Sbjct: 78 tatctgattgagccgcgccaatatct 103
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatct 84
||||||||||||||||||||||
Sbjct: 73 tgattgagccgcgtcaatatct 94
>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatct 84
||||||||||||||||||||||
Sbjct: 74 tgattgagccgcgtcaatatct 95
>RF00643;MIR171_1;BABK01034163.1/917-1020 34305:Lotus japonicus
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatct 84
||||||||||||||||||||||
Sbjct: 72 tgattgagccgcgtcaatatct 93
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatct 84
||||||||||||||||||||||
Sbjct: 71 tgattgagccgcgtcaatatct 92
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tatctgattgagccgcgtcaatatct 84
||||||||||||||||| ||||||||
Sbjct: 64 tatctgattgagccgcgccaatatct 89
