miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>44821_miR408:micropc
Length = 119
Score = 129 bits (65), Expect = 5e-31
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 2 gctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatgaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatgaa 60
Query: 62 agnnnnnnnnnnnnnnnnnntctgttgtggctacgctcatgcactgcctcttccctggc 120
|| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggagagagagagagagagatctgttgtggctacgctcatgcactgcctcttccctggc 119
>45394_miR408:micropc
Length = 112
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 82 tctgttgtggctacgctcatgcactgcctcttccctggct 121
||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tctgttgtggctacgctcatgcactgcctcttccctggct 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 ggctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatga 60
||||||||| |||||| ||| ||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 1 ggctgggaaaaggcagagcaagaatgtagctattgacagaaa-tggtgaagtgagaatga 59
>44968_miR408:micropc
Length = 110
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 82 tctgttgtggctacgctcatgcactgcctcttccctggc 120
|||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tctgttgtggctacgctcatgcactgcctcttccctggc 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 2 gctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatga 60
|||||||| |||||| ||| ||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 1 gctgggaaaaggcagagcaagaatgtagctattgacagaaa-tggtgaagtgagaatga 58
>45398_miR408:micropc
Length = 89
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 83 ctgttgtggctacgctcatgcactgcctcttccctggct 121
||||||||||| | |||||||||||||||||||||||||
Sbjct: 51 ctgttgtggctccactcatgcactgcctcttccctggct 89
>45860_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 83 ctgttgtggctacgctcatgcactgcctcttccctggc 120
||||||||||| | ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
>45090_miR408:micropc
Length = 87
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 83 ctgttgtggctacgctcatgcactgcctcttccctggc 120
||||||||||| | ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctccactcatgcactgcctcttccctggc 87
>46359_miR408:micropc
Length = 85
Score = 56.0 bits (28), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 82 tctgttgtggctacgctcatgcactgcctcttccctggct 121
|||||| ||||| | |||||||||||||||||||||||||
Sbjct: 46 tctgttttggcttcactcatgcactgcctcttccctggct 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1 ggctgggaacaggcagggcacgaatggagctatcaacagaaa 42
|||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 1 ggctgggaacaggcagagcatggatgcagctattaacagaaa 42
>46309_miR408:micropc
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 82 tctgttgtggctacgctcatgcactgcctcttccctggc 120
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 2 gctgggaacaggcagggcacgaatggagctatcaacagaaa 42
||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 1 gctgggaacaggcagagcatggatgcagctattaacagaaa 41
>46155_miR408:micropc
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 82 tctgttgtggctacgctcatgcactgcctcttccctggc 120
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 45 tctgttttggcttcactcatgcactgcctcttccctggc 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 2 gctgggaacaggcagggcacgaatggagctatcaacagaaa 42
||||||||||||||| ||| | ||| |||||| ||||||||
Sbjct: 1 gctgggaacaggcagagcatggatgcagctattaacagaaa 41
>45531_miR408:micropc
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 83 ctgttgtggctacgctcatgcactgcctcttccctggct 121
||||||||||| |||||||||||||||||||||||||
Sbjct: 51 ctgttgtggctctactcatgcactgcctcttccctggct 89
>46728_miR408:micropc
Length = 87
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 83 ctgttgtggctacgctcatgcactgcctcttccctggc 120
||||||||||| ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
>46159_miR408:micropc
Length = 87
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 83 ctgttgtggctacgctcatgcactgcctcttccctggc 120
||||||||||| ||||||||||||||||||||||||
Sbjct: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
>45949_miR408:micropc
Length = 99
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 tgttgtggctacgctcatgcactgcctcttccctggc 120
|||||||||| ||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
>45551_miR408:micropc
Length = 99
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 tgttgtggctacgctcatgcactgcctcttccctggc 120
|||||||||| ||||||||||||||||||||||||
Sbjct: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
>45814_miR408:micropc
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggct 121
|||||||||||||||||||||||
Sbjct: 63 catgcactgcctcttccctggct 85
>45593_miR408:micropc
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggct 121
|||||||||||||||||||||||
Sbjct: 63 catgcactgcctcttccctggct 85
>46505_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggc 120
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
>46401_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggc 120
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
>46052_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggc 120
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
>45726_miR408:micropc
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggc 120
||||||||||||||||||||||
Sbjct: 62 catgcactgcctcttccctggc 83
