miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 133 bits (67), Expect = 6e-31
Identities = 103/121 (85%)
Strand = Plus / Plus
Query: 1 ggctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 ggctgggaacaggcagggcacgaatggagctatcaacagaaaatggtaaagtgagaatga 78
Query: 61 aagnnnnnnnnnnnnnnnnnntctgttgtggctacgctcatgcactgcctcttccctggc 120
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 79 aaggagagagagagagagagatctgttgtggctacgctcatgcactgcctcttccctggc 138
Query: 121 t 121
|
Sbjct: 139 t 139
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 83 ctgttgtggctacgctcatgcactgcctcttccctggct 121
||||||||||| | |||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 84 tgttgtggctacgctcatgcactgcctcttccctggc 120
|||||||||| ||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggct 121
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggct 121
|||||||||||||||||||||||
Sbjct: 79 catgcactgcctcttccctggct 101
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 catgcactgcctcttccctggct 121
|||||||||||||||||||||||
Sbjct: 86 catgcactgcctcttccctggct 108
