miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46157_miR1439:micropc
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
Query: 61 gtcacctattttggaacggagggagtat 88
||||||||||||||||||||||||||||
Sbjct: 61 gtcacctattttggaacggagggagtat 88
>46754_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>46594_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>46493_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>46463_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>46315_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>46176_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>45797_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||||||||| ||||||||||| || || | ||||||||||
Sbjct: 86 tactccctccgttccaaaatagatgaaccaactttgtattaacttta-gtacaaagttgg 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| |||||||||| || ||||||||
Sbjct: 27 gtcatctattttggagcgaagggagta 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 15 caaaatagatgacccaactttgtactacctccatttacaaagttgagtcacctattttgg 74
||||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct: 15 caaaatagatgacccaactttgtactaaagtta-atacaaagttggttcatctattttgg 73
Query: 75 aacggagggagta 87
|||||||||||||
Sbjct: 74 aacggagggagta 86
>45675_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>45656_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>45535_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>45104_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||||||||| ||||||||||| || || | ||||||||||
Sbjct: 86 tactccctccgttccaaaatagatgaaccaactttgtattaacttta-gtacaaagttgg 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| |||||||||| || ||||||||
Sbjct: 27 gtcatctattttggagcgaagggagta 1
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 15 caaaatagatgacccaactttgtactacctccatttacaaagttgagtcacctattttgg 74
||||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct: 15 caaaatagatgacccaactttgtactaaagtta-atacaaagttggttcatctattttgg 73
Query: 75 aacggagggagta 87
|||||||||||||
Sbjct: 74 aacggagggagta 86
>44790_miR1439:micropc
Length = 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| || |||||||||| ||||||||||||| || | |||||| |||
Sbjct: 1 tactccctccgttccagaatagatgactcaactttgtactaacttta-gtacaaacttgg 59
Query: 61 gtcacctattttggaacggagggagta 87
|||| | ||||||||||||||||||||
Sbjct: 60 gtcatccattttggaacggagggagta 86
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/87 (85%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 1 tactccctctgtttcaaaatagatgacccaactttgtactacctccatttacaaagttga 60
||||||||| ||| |||||| |||||||||| ||||||||| | | ||||||||||
Sbjct: 86 tactccctccgttccaaaatggatgacccaagtttgtactaaagttagt-acaaagttga 28
Query: 61 gtcacctattttggaacggagggagta 87
|||| ||||| ||||||||||||||||
Sbjct: 27 gtcatctattctggaacggagggagta 1
>46679_miR1439:micropc
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 57 ttgagtcacctattttggaacggagggagta 87
||||| ||| |||||||||||||||||||||
Sbjct: 67 ttgagacacttattttggaacggagggagta 97
>46048_miR1439:micropc
Length = 58
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 58 tgagtcacctattttggaacggagggagtat 88
|||||||| |||||||| |||||||||||||
Sbjct: 27 tgagtcacttattttgggacggagggagtat 57
>45189_miR1439:micropc
Length = 78
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 54 aagttgagtcacctattttggaacggagggagtat 88
|||||||| || ||||||||||||||||||||||
Sbjct: 43 aagttgagacagttattttggaacggagggagtat 77
>46433_miR1439:micropc
Length = 153
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 attttggaacggagggagtat 88
|||||||||||||||||||||
Sbjct: 133 attttggaacggagggagtat 153
>46347_miR1137:micropc
Length = 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 gatgacccaactttgtacta 41
||||||||||||||||||||
Sbjct: 55 gatgacccaactttgtacta 36
