miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54436_sbi-miR168:pmrd
Length = 106
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 80
Query: 61 caagtga 67
|||||||
Sbjct: 81 caagtga 87
>55002_zma-miR168m:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 61 caagtga 67
|||||||
Sbjct: 59 caagtga 65
>54999_zma-miR168a:pmrd
Length = 104
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 78
Query: 61 caagtga 67
|||||||
Sbjct: 79 caagtga 85
>54655_ssp-miR168:pmrd
Length = 65
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 58
Query: 61 caagtga 67
|||||||
Sbjct: 59 caagtga 65
>54636_sof-miR168a:pmrd
Length = 104
Score = 71.9 bits (36), Expect = 5e-14
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
|||||||||||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 78
Query: 61 caagtga 67
|||||||
Sbjct: 79 caagtga 85
>55000_zma-miR168b:pmrd
Length = 104
Score = 63.9 bits (32), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
|||||||||||||||||||||| |||||| | | |||||||| ||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcccgccttgcat 78
Query: 61 caagtga 67
|||||||
Sbjct: 79 caagtga 85
>48661_hvv-miR168:pmrd
Length = 66
Score = 61.9 bits (31), Expect = 5e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
|||||||||||||||||||||| ||||| || | |||||| | |||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggaccctccgccc-gccccgacgggccggatcccgccttgcac 59
Query: 61 caagtga 67
|||||||
Sbjct: 60 caagtga 66
>54637_sof-miR168b:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 3e-09
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 60
|||||||| ||||||||||||| |||||| || |||||||| |||||||||||||||
Sbjct: 21 tcgcttgg-gcagatcgggacccgccgcccggcc--gacgggacggatcccgccttgcac 77
Query: 61 caagtga 67
|||||||
Sbjct: 78 caagtga 84
>48875_osa-miR168m:pmrd
Length = 67
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccg 30
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccg 30
>48873_osa-miR168a:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccg 30
|||||||||||||||||||||| |||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccg 40
>48872_osa-miR168a:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccg 30
|||||||||||||||||||||| |||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccg 40
>48871_osa-miR168a:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccg 30
|||||||||||||||||||||| |||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccg 40
>55001_zma-miR168c:pmrd
Length = 67
Score = 48.1 bits (24), Expect = 7e-07
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccg-ccttgca 59
||||||| |||||||||||||| |||||| || | |||||||| ||||||| |||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgccccgcgc-gacgggacggatcccgcccttgca 59
Query: 60 ccaagtga 67
|||||||
Sbjct: 60 tcaagtga 67
>54665_stu-miR168:pmrd
Length = 133
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacct 23
||||||||||||| |||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
>54546_sly-miR168:pmrd
Length = 145
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggacct 23
||||||||||||| |||||||||
Sbjct: 1 tcgcttggtgcaggtcgggacct 23
