miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 182 bits (92), Expect = 5e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttga 69
Query: 61 gatagatggttcataggcagtctccttggcta 92
||||||||||||||||||||||||||||||||
Sbjct: 70 gatagatggttcataggcagtctccttggcta 101
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 93.7 bits (47), Expect = 4e-19
Identities = 82/92 (89%), Gaps = 5/92 (5%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttga 60
|||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||
Sbjct: 107 tagccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgtgaacctttg- 50
Query: 61 gatagatggttcataggcagtctccttggcta 92
|| ||||||||||||||||||||||||||
Sbjct: 49 ---agttggttcataggcagtctccttggcta 21
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 81/91 (89%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttgag 61
||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgtgaacctttg-- 57
Query: 62 atagatggttcataggcagtctccttggcta 92
|| ||||||||||||||||||||||||||
Sbjct: 58 --agttggttcataggcagtctccttggcta 86
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtgtcctt 28
||||||||||||||||||||||||||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcctt 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 67 tggttcataggcagtctccttggcta 92
||||||||||||||||||||||||||
Sbjct: 46 tggttcataggcagtctccttggcta 21
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtgtcctt 28
||||||||||||||||||||||||||||
Sbjct: 121 tagccaaggatgacttgcctgtgtcctt 94
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtgtcctt 28
||||||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtgtcctt 41
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tggttcataggcagtctccttggcta 92
||||||||||||||||||||||||||
Sbjct: 76 tggttcataggcagtctccttggcta 101
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtgtcctt 28
||||||||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctgtgtcctt 36
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtgtcct 27
|||||||||||||||||||||||||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcct 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 67 tggttcataggcagtctccttggcta 92
|||||||| |||||||||||||||||
Sbjct: 46 tggttcatgggcagtctccttggcta 21
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtgtcct 27
|||||||||||||||||||||||||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcct 36
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 tggttcataggcagtctccttggcta 92
|||||||| |||||||||||||||||
Sbjct: 72 tggttcatgggcagtctccttggcta 97
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctgtgtcctttgt 31
||||||||||||||||||| ||||||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgt 30
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtgtc 25
|||||||||||||||||||||||||
Sbjct: 124 tagccaaggatgacttgcctgtgtc 100
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa
Japonica Group
Length = 131
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtgtc 25
|||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtgtc 38
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 113 tagccaaggatgacttgcctgtg 91
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 134 tagccaaggatgacttgcctgtg 112
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 128 tagccaaggatgacttgcctgtg 106
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 133 tagccaaggatgacttgcctgtg 111
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 155 tagccaaggatgacttgcctgtg 133
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtg 36
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgtg 35
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 16 tagccaaggatgacttgcctgtg 38
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtg 23
|||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgtg 35
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 148 tagccaaggatgacttgcctgt 127
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 137 tagccaaggatgacttgcctgt 116
>RF00645;MIR169_2;ABIM01014270.1/4373-4157 3649:Carica papaya
(papaya)
Length = 217
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgtgtcc 26
||||||||||||||||||||| ||||
Sbjct: 14 tagccaaggatgacttgcctgcgtcc 39
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcctgt 33
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
>RF00645;MIR169_2;BT061088.1/1224-1114 4577:Zea mays
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctgtg 23
||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctgtg 22
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctgt 22
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
