miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 325 bits (164), Expect = 1e-88
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
Query: 61 cccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcatatctcaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cccacagccctatcccgtcaatggggggcattggataggcttgtggcttgcatatctcag 132
Query: 121 gagctgcattatccaagtttagatccttgtttggattgaagggagctc 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gagctgcattatccaagtttagatccttgtttggattgaagggagctc 180
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 105 bits (53), Expect = 2e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 60
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggat 72
Query: 61 cccacagccctat 73
|||||||||||||
Sbjct: 73 cccacagccctat 85
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 83.8 bits (42), Expect = 7e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 60
|||||||||||||||||||||| | || | |||||||||| |||||||||| |||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 61 cccacagccctatc 74
||||||||||||||
Sbjct: 61 cccacagccctatc 74
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 75.8 bits (38), Expect = 2e-13
Identities = 67/74 (90%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 96 taggcttgtggcttgcatatctcaagagctgcattatcc-aagtttagatccttgtttgg 154
|||||||| || |||||||||||| ||||||||||| || ||| ||| ||||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagctta-atccttgtttgg 166
Query: 155 attgaagggagctc 168
||||||||||||||
Sbjct: 167 attgaagggagctc 180
Score = 71.9 bits (36), Expect = 3e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 60
|||||||||||||||||||||||| | || | |||| ||||||||||| || |||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 61 cccacagcccta 72
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 75.8 bits (38), Expect = 2e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 60
|||||||||||||||||||||||| |||| ||||||||||| ||||||| | |||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
Query: 61 cc 62
||
Sbjct: 73 cc 74
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 75.8 bits (38), Expect = 2e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 1 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 60
|||||||||||||||||| ||| | ||| || || ||||||||||||||||| |||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 61 cccacagccctatc 74
|| ||||||||||
Sbjct: 73 tcctcagccctatc 86