miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46428_miR1436:micropc
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
Query: 61 ggagggagt 69
|||||||||
Sbjct: 61 ggagggagt 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 69 actccctccgtcccataatgtaagacgttttttgtcaaaaaacgtcttacattatggaac 10
Query: 61 ggagggagt 69
|||||||||
Sbjct: 9 ggagggagt 1
>46264_miR1436:micropc
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
Query: 61 ggagggagt 69
|||||||||
Sbjct: 61 ggagggagt 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 69 actccctccgtcccataatgtaagacgttttttgtcaaaaaacgtcttacattatggaac 10
Query: 61 ggagggagt 69
|||||||||
Sbjct: 9 ggagggagt 1
>45393_miR1436:micropc
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
Query: 61 ggagggagt 69
|||||||||
Sbjct: 61 ggagggagt 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 69 actccctccgtcccataatgtaagacgttttttgtcaaaaaacgtcttacattatggaac 10
Query: 61 ggagggagt 69
|||||||||
Sbjct: 9 ggagggagt 1
>45005_miR1436:micropc
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
Query: 61 ggagggagt 69
|||||||||
Sbjct: 61 ggagggagt 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggac 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 69 actccctccgtcccataatgtaagacgttttttgtcaaaaaacgtcttacattatggaac 10
Query: 61 ggagggagt 69
|||||||||
Sbjct: 9 ggagggagt 1
>46187_miR1132:micropc
Length = 82
Score = 65.9 bits (33), Expect = 3e-12
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 2 ctccctccgttccataatgtaagacgttttttgaca 37
|||||||||||||||||||||||||||| |||||||
Sbjct: 82 ctccctccgttccataatgtaagacgttntttgaca 47
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 37 aaaaaacgtcttacattatgggacggagggag 68
||||||||||||||||||||||||||||||||
Sbjct: 32 aaaaaacgtcttacattatgggacggagggag 1
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 ctccctccgttccataatgtaagacgtttttt 33
|||||||||| |||||||||||||||||||||
Sbjct: 1 ctccctccgtcccataatgtaagacgtttttt 32
Score = 52.0 bits (26), Expect = 5e-08
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 36 caaaaaacgtcttacattatgggacggagggag 68
|||| ||||||||||||||||| ||||||||||
Sbjct: 50 caaanaacgtcttacattatggaacggagggag 82
>46658_miR1436:micropc
Length = 79
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 36 caaaaaacgtcttacattatgggacggaggga 67
||||||||||||||||||||||||||||||||
Sbjct: 48 caaaaaacgtcttacattatgggacggaggga 79
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 3 tccctccgttccataatgtaagacgttttttgac 36
||||||||| ||||||||||||||||||||||||
Sbjct: 79 tccctccgtcccataatgtaagacgttttttgac 46
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 36 caaaaaacgtcttacattatgggacggaggga 67
||||||||||||||||||| ||||||||||||
Sbjct: 32 caaaaaacgtcttacattacgggacggaggga 1
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 3 tccctccgttccataatgtaagacgttttttgaca 37
||||||||| || ||||||||||||||||||||||
Sbjct: 1 tccctccgtcccgtaatgtaagacgttttttgaca 35
>46077_miR1130:micropc
Length = 75
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 36 caaaaaacgtcttacattatgggacggagg 65
||||||||||||||||||||||||||||||
Sbjct: 46 caaaaaacgtcttacattatgggacggagg 75
Score = 56.0 bits (28), Expect = 3e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 5 cctccgttccataatgtaagacgttttttgac 36
||||||| ||||||||||||||||||||||||
Sbjct: 75 cctccgtcccataatgtaagacgttttttgac 44
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 36 caaaaaacgtcttacattatgggacggagg 65
||||||||||||||||||| ||||||||||
Sbjct: 30 caaaaaacgtcttacattacgggacggagg 1
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 5 cctccgttccataatgtaagacgttttttgaca 37
||||||| || ||||||||||||||||||||||
Sbjct: 1 cctccgtcccgtaatgtaagacgttttttgaca 33
>45448_miR1436:micropc
Length = 64
Score = 58.0 bits (29), Expect = 8e-10
Identities = 56/65 (86%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 5 cctccgttccataatgtaagacgttttttgacaaaaaacgtcttacattatgggacggag 64
||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct: 5 cctccgtctcataatgtaagacgttttttgacaata-----cttacattatgggacagag 59
Query: 65 ggagt 69
|||||
Sbjct: 60 ggagt 64
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 36 caaaaaacgtcttacattatgggacggagg 65
||||||||||||||||||||| ||||||||
Sbjct: 34 caaaaaacgtcttacattatgagacggagg 5
>46467_miR1130:micropc
Length = 56
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 5 cctccgttccataatgtaagacgttttttgacaa 38
||||||| |||||||||||||||||||||||||
Sbjct: 1 cctccgtctcataatgtaagacgttttttgacaa 34
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 36 caaaaaacgtcttacattatgggacggagg 65
||||||||||||||||||||| ||||||||
Sbjct: 30 caaaaaacgtcttacattatgagacggagg 1
>46150_miR1130:micropc
Length = 75
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 36 caaaaaacgtcttacattatgggacggagg 65
||||||| ||||||||||||||||||||||
Sbjct: 30 caaaaaatgtcttacattatgggacggagg 1
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 5 cctccgttccataatgtaagacgttttttgaca 37
||||||| |||||||||||||| ||||||||||
Sbjct: 1 cctccgtcccataatgtaagacattttttgaca 33
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 36 caaaaaacgtcttacattatgggacggagg 65
||||||||||||||| ||||||||| ||||
Sbjct: 46 caaaaaacgtcttacgttatgggacagagg 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 13 ccataatgtaagacgttttttgac 36
|||||| |||||||||||||||||
Sbjct: 67 ccataacgtaagacgttttttgac 44
>45479_miR1436:micropc
Length = 83
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 36 caaaaaacgtcttacattatgggacggagggagt 69
|||||||| ||||||||||||||||| |||||||
Sbjct: 50 caaaaaacatcttacattatgggacgaagggagt 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaagacgttttttgaca 37
||||||| ||| ||||||||||||| |||||||||||
Sbjct: 83 actcccttcgtcccataatgtaagatgttttttgaca 47
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 39 aaaacgtcttacattatgggacggagggagt 69
|||| ||||||||||| ||||| ||||||||
Sbjct: 31 aaaatgtcttacattacgggacagagggagt 1
>45044_miR1130:micropc
Length = 56
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 5 cctccgttccataatgtaagacgttttttgacaa 38
||||||| |||||||||||||||||||||||||
Sbjct: 1 cctccgtctcataatgtaagacgttttttgacaa 34
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 36 caaaaaacgtcttacattatgggacggagg 65
||||||||||||||||||||| ||||||||
Sbjct: 30 caaaaaacgtcttacattatgagacggagg 1
>45219_miR1436:micropc
Length = 54
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 37 aaaaaacgtcttacattatgggacggagggagt 69
||||||||||||||||| | |||||||||||||
Sbjct: 33 aaaaaacgtcttacattttaggacggagggagt 1
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 actccctccgttccataatgtaagacgtttttt 33
||||||||||| | | |||||||||||||||||
Sbjct: 1 actccctccgtcctaaaatgtaagacgtttttt 33
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47 ttacattatgggacggagggagt 69
||||||| |||||||||||||||
Sbjct: 32 ttacattttgggacggagggagt 54
>46433_miR1439:micropc
Length = 153
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaagacgtttt 31
||||||||||||||| |||||||| ||||||
Sbjct: 151 actccctccgttccaaaatgtaagtcgtttt 121
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 39 aaaacgtcttacattatgggacggagggagt 69
|||||| |||||||| ||| |||||||||||
Sbjct: 121 aaaacgacttacattttggaacggagggagt 151
>46560_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>46416_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>46351_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>46296_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>46229_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>46082_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45853_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45812_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45616_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45608_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45459_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45450_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45382_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>45149_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>44955_miR1436:micropc
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 37 aaaaaacg-tcttacattatgggacggagggagt 69
|||||||| ||||| |||||||||||||||||||
Sbjct: 47 aaaaaacgctcttatattatgggacggagggagt 80
>46744_miR1436:micropc
Length = 83
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 actccctccgttccataatgtaaga 25
||||||||||||||||||| |||||
Sbjct: 1 actccctccgttccataatataaga 25
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 tcttacattatgggacggagggagt 69
||||| |||||||||||||||||||
Sbjct: 59 tcttatattatgggacggagggagt 83
>46437_miR1436:micropc
Length = 108
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaaga 25
|||||||||||| ||||||||||||
Sbjct: 108 actccctccgtttcataatgtaaga 84
>46683_miR1436:micropc
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 46 cttacattatgggacggagggagt 69
|||| |||||||||||||||||||
Sbjct: 37 cttatattatgggacggagggagt 60
>46280_miR1436:micropc
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 cataatgtaagacgtttttt 33
||||||||||||||||||||
Sbjct: 15 cataatgtaagacgtttttt 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 37 aaaaaacgtcttacattatg 56
||||||||||||||||||||
Sbjct: 34 aaaaaacgtcttacattatg 15
>45994_miR1436:micropc
Length = 162
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 actccctccgttccataatgtaag 24
||||||||||||||||||| ||||
Sbjct: 162 actccctccgttccataatataag 139
>46825_miR1436:micropc
Length = 89
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 actccctccgttccataat 19
|||||||||||||||||||
Sbjct: 89 actccctccgttccataat 71
>46353_miR1436:micropc
Length = 89
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 actccctccgttccataat 19
|||||||||||||||||||
Sbjct: 89 actccctccgttccataat 71
>45775_miR1436:micropc
Length = 89
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 actccctccgttccataat 19
|||||||||||||||||||
Sbjct: 89 actccctccgttccataat 71
