miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45930_miR398:micropc
Length = 63
Score = 121 bits (61), Expect = 5e-29
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 aggtgtgacatgagaacacatgatatacttagatattttcacgtgttctcaggtcgcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aggtgtgacatgagaacacatgatatacttagatattttcacgtgttctcaggtcgcccc 61
Query: 61 t 61
|
Sbjct: 62 t 62
>46312_miR398:micropc
Length = 60
Score = 87.7 bits (44), Expect = 8e-19
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 2 ggtgtgacatgagaacacatgatatacttagata-ttttcacgtgttctcaggtcgcccc 60
||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1 ggtgtgacatgagaacacacgatatacttcgatatttttcacgtgttctcaggtcgcccc 60
>46367_miR398:micropc
Length = 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 cacgtgttctcaggtcgcccct 61
||||||||||||||||||||||
Sbjct: 51 cacgtgttctcaggtcgcccct 72
>45384_miR398:micropc
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 cacgtgttctcaggtcgcccct 61
||||||||||||||||||||||
Sbjct: 62 cacgtgttctcaggtcgcccct 83
>45163_miR398:micropc
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 cacgtgttctcaggtcgcccct 61
||||||||||||||||||||||
Sbjct: 50 cacgtgttctcaggtcgcccct 71
>45087_miR398:micropc
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 cacgtgttctcaggtcgcccct 61
||||||||||||||||||||||
Sbjct: 62 cacgtgttctcaggtcgcccct 83
>46686_miR398:micropc
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ttcacgtgttctcaggtcgcccct 61
|||| |||||||||||||||||||
Sbjct: 73 ttcatgtgttctcaggtcgcccct 96
>45294_miR398:micropc
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 38 ttcacgtgttctcaggtcgcccct 61
|||| |||||||||||||||||||
Sbjct: 74 ttcatgtgttctcaggtcgcccct 97
>46795_miR398:micropc
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 82 gtgttctcaggtcgcccct 100
>46725_miR398:micropc
Length = 67
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 48 gtgttctcaggtcgcccct 66
>46690_miR398:micropc
Length = 75
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 57 gtgttctcaggtcgcccct 75
>46604_miR398:micropc
Length = 67
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 48 gtgttctcaggtcgcccct 66
>46392_miR398:micropc
Length = 68
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 49 gtgttctcaggtcgcccct 67
>46371_miR398:micropc
Length = 77
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 58 gtgttctcaggtcgcccct 76
>46304_miR398:micropc
Length = 59
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 41 gtgttctcaggtcgcccct 59
>46303_miR398:micropc
Length = 75
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 57 gtgttctcaggtcgcccct 75
>46116_miR398:micropc
Length = 77
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 58 gtgttctcaggtcgcccct 76
>46114_miR398:micropc
Length = 65
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 47 gtgttctcaggtcgcccct 65
>46111_miR398:micropc
Length = 76
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 58 gtgttctcaggtcgcccct 76
>46074_miR398:micropc
Length = 75
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 57 gtgttctcaggtcgcccct 75
>46034_miR398:micropc
Length = 77
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 58 gtgttctcaggtcgcccct 76
>45898_miR398:micropc
Length = 66
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 48 gtgttctcaggtcgcccct 66
>45694_miR398:micropc
Length = 99
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 81 gtgttctcaggtcgcccct 99
>45519_miR398:micropc
Length = 61
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 42 gtgttctcaggtcgcccct 60
>45422_miR398:micropc
Length = 78
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 59 gtgttctcaggtcgcccct 77
>45192_miR398:micropc
Length = 65
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 47 gtgttctcaggtcgcccct 65
>45095_miR398:micropc
Length = 87
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 69 gtgttctcaggtcgcccct 87
>44891_miR398:micropc
Length = 89
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 gtgttctcaggtcgcccct 61
|||||||||||||||||||
Sbjct: 70 gtgttctcaggtcgcccct 88
