miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42623_sbi-MIR528:mirbase
Length = 84
Score = 155 bits (78), Expect = 6e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 tggaaggggcatgcagaggagcacgagggttggctggaagccgacctacgcctcgctggc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tggaaggggcatgcagaggagcacgaggcttggctggaagccgacctacgcctcgctggc 60
Query: 61 tctcctgtgcctgcctcttcca 82
||||||||||||||||||||||
Sbjct: 61 tctcctgtgcctgcctcttcca 82
>42481_ssp-MIR528:mirbase
Length = 92
Score = 81.8 bits (41), Expect = 7e-17
Identities = 78/92 (84%), Gaps = 10/92 (10%)
Strand = Plus / Plus
Query: 1 tggaaggggcatgcagaggagcacgagggttggctggaagccgac----------ctacg 50
|||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct: 1 tggaaggggcatgcagaggagcacgaggcttggctaaaagccgacctgtgctatgctacc 60
Query: 51 cctcgctggctctcctgtgcctgcctcttcca 82
||||||||||||||||||||||||||||||||
Sbjct: 61 cctcgctggctctcctgtgcctgcctcttcca 92
>42833_zma-MIR528b:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tggaaggggcatgcagaggagcacga 26
||||||||||||||||||||||||||
Sbjct: 2 tggaaggggcatgcagaggagcacga 27
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 gctctcctgtgcctgcctcttcca 82
||||||||||||||||||||||||
Sbjct: 53 gctctcctgtgcctgcctcttcca 76
>42832_zma-MIR528a:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctctcctgtgcctgcctcttcca 82
|||||||||||||||||||||||
Sbjct: 99 ctctcctgtgcctgcctcttcca 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tggaaggggcatgcagaggag 21
|||||||||||||||||||||
Sbjct: 2 tggaaggggcatgcagaggag 22
>42102_osa-MIR528:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaaggggcatgcagaggagca 23
|||||||||||||||||||||||
Sbjct: 3 tggaaggggcatgcagaggagca 25
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 60 ctctcctgtgcctgcctcttcca 82
||||||||||| |||||||||||
Sbjct: 64 ctctcctgtgcttgcctcttcca 86
>41806_bdi-MIR528:mirbase
Length = 160
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaaggggcatgcagaggagca 23
|||||||||||||||||||||||
Sbjct: 36 tggaaggggcatgcagaggagca 58
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 tctcctgtgcctgcctcttcca 82
||||||||||||||||||||||
Sbjct: 99 tctcctgtgcctgcctcttcca 120
