miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 47 tggcctttgtggatggcgtgcgaggagccatgca 80
||||||| ||||||||||||||||||||||||||
Sbjct: 50 tggccttggtggatggcgtgcgaggagccatgca 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 56.0 bits (28), Expect = 7e-08
Identities = 68/80 (85%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcttagtccatttagtattagatggcctttgtggat 60
|||||||||||||||||||||| |||| || |||| |||| | |||| ||| ||||||
Sbjct: 4 tgcctggctccctgtatgccatatgctgagcccatcgagta-tcgatgacctccgtggat 62
Query: 61 ggcgtgcgaggagccatgca 80
||||| |||||||||||||
Sbjct: 63 ggcgtatgaggagccatgca 82
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgc 29
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgc 29
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgc 29
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgc 29
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttgc 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 45 gatggcctttgtggatggcgtgcgaggagccatgca 80
||||||||| ||||||||||| |||||||||||||
Sbjct: 48 gatggccttcgtggatggcgtatgaggagccatgca 83
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttg 25
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttg 25
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttg 25
|||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatttg 28
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
|||||||||||||| |||||||||||
Sbjct: 4 tgcctggctccctgcatgccatttgc 29
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccat 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcttag 30
||||||||||||||||||||| | ||||||
Sbjct: 4 tgcctggctccctgtatgccactcgcttag 33
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgcttag 30
||||||||||||||||||||| | ||||||
Sbjct: 4 tgcctggctccctgtatgccactggcttag 33
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccatttgc 26
||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccacttgc 29
